PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992694.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 775aa MW: 85009.4 Da PI: 7.9736

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992694.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57	3.6e-18	329	428	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g+ W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e++ XP_024992694.1 329 FEKVLSASDAGRIGRLVLPKKCAEAYlpPISQPEGYPLVVQDLKGKDWVLQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGK 421 99************************666678889***********99899999999.*******************766.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_024992694.1 422 LVMGFRK 428 7777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence
MASSSGSTKV CFNSTCKEVL EVPRQGWLCR TGDFADLCDR CSSAFKDGKF CDTYHMNASG 60 WRCCESCGKQ IHCGCIVSFH MFILLDAGGI ECLNCAKTEF ILVKMILPPS EKKCPRFYFS 120 FSQNKSPLPK TPNPTWPSAS HFLQGPAERI RDISSKNWRS ISGSGPVPWR QAPSLFNASK 180 VQPEFQSVLG SIDNPLATEQ LSSCSLGKST ANEPSEKLVN ESWQVGASEM AAARARAIGI 240 QYDGQCNLFG DVPRQSFFYT NELPTSLSSL PARMVAQDQK SEKGKAHNAK SRGETRGRNQ 300 LLPRYWPRIT DQELQQISGG TNAKITPLFE KVLSASDAGR IGRLVLPKKC AEAYLPPISQ 360 PEGYPLVVQD LKGKDWVLQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRLEPEG 420 KLVMGFRKAS LASPSDQGNE TVSTRNEDPS KGTISFKSRN PDGTWSEVDK ISIRAKRKKG 480 AKTGSNCKQL KLNGEEILQL NVTLEQVQEL LQPPLINAPT IVVVEGVEFE DYQEAPIIGS 540 PAIFSTNHQG SICSMEVKPT PERLQHMLPM INHASSRNIN SENPEPVKMM DGLDALADLA 600 IQDGEAIPTL SQATTRHPRH RPGCTCIVCI QSPSATKHKP TCTCNVCLAV KRFTQTPMVL 660 HGSKDSEKEA GNSVRVPSQV PYADILRHTQ TGNSGHDHKT AAGGSSENNP DGEKPSTPFK 720 SQNIDLNTQP EREEESSSPV LESIGITSLA PEPTQRCIRQ MKLSINGITD GNHAL

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence

MASSSGSTKV CFNSTCKEVL EVPRQGWLCR TGDFADLCDR CSSAFKDGKF CDTYHMNASG  60
WRCCESCGKQ IHCGCIVSFH MFILLDAGGI ECLNCAKTEF ILVKMILPPS EKKCPRFYFS  120
FSQNKSPLPK TPNPTWPSAS HFLQGPAERI RDISSKNWRS ISGSGPVPWR QAPSLFNASK  180
VQPEFQSVLG SIDNPLATEQ LSSCSLGKST ANEPSEKLVN ESWQVGASEM AAARARAIGI  240
QYDGQCNLFG DVPRQSFFYT NELPTSLSSL PARMVAQDQK SEKGKAHNAK SRGETRGRNQ  300
LLPRYWPRIT DQELQQISGG TNAKITPLFE KVLSASDAGR IGRLVLPKKC AEAYLPPISQ  360
PEGYPLVVQD LKGKDWVLQF RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRLEPEG  420
KLVMGFRKAS LASPSDQGNE TVSTRNEDPS KGTISFKSRN PDGTWSEVDK ISIRAKRKKG  480
AKTGSNCKQL KLNGEEILQL NVTLEQVQEL LQPPLINAPT IVVVEGVEFE DYQEAPIIGS  540
PAIFSTNHQG SICSMEVKPT PERLQHMLPM INHASSRNIN SENPEPVKMM DGLDALADLA  600
IQDGEAIPTL SQATTRHPRH RPGCTCIVCI QSPSATKHKP TCTCNVCLAV KRFTQTPMVL  660
HGSKDSEKEA GNSVRVPSQV PYADILRHTQ TGNSGHDHKT AAGGSSENNP DGEKPSTPFK  720
SQNIDLNTQP EREEESSSPV LESIGITSLA PEPTQRCIRQ MKLSINGITD GNHAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21550.1	1e-116	B3 family protein