PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992693.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Protein Properties

Length: 779aa MW: 85040.1 Da PI: 7.5102

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992693.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	57	3.6e-18	333	432	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g+ W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e++ XP_024992693.1 333 FEKVLSASDAGRIGRLVLPKKCAEAYlpPISQPEGYPLVVQDLKGKDWVLQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGK 425 99************************666678889***********99899999999.*******************766.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_024992693.1 426 LVMGFRK 432 7777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence
MASSSGSTKV CFNSTCKEVL EVPRQGWLCR TGDFADLCDR CSSAFKDGKF CDTYHMNASG 60 WRCCESCGKQ IHCGCIVSFH MFILLDAGGI ECLNCAKTEF ILTPNPTWPS ASHFLQGPAE 120 RIRDISSKNW RSISGSGPVP WRQAPSLFNA SKVQPEFQSV LGSIDNPLAT EQLSSCSLGK 180 STANEPSEKL VNESWQVGAS EMAAARARAI GIQYDGQCNL FGDVPRQSFF YTNELPTSLS 240 SLPARMVAQD QKSEKGKVSG IHVQHLCPLP LVGKQFSNNN GSGPSLEAQA HNAKSRGETR 300 GRNQLLPRYW PRITDQELQQ ISGGTNAKIT PLFEKVLSAS DAGRIGRLVL PKKCAEAYLP 360 PISQPEGYPL VVQDLKGKDW VLQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRL 420 EPEGKLVMGF RKASLASPSD QGNETVSTRN EDPSKGTISF KSRNPDGTWS EVDKISIRAK 480 RKKGAKTGSN CKQLKLNGEE ILQLNVTLEQ VQELLQPPLI NAPTIVVVEG VEFEDYQEAP 540 IIGSPAIFST NHQGSICSME VKPTPERLQH MLPMINHASS RNINSENPEP VKMMDGLDAL 600 ADLAIQDGEA IPTLSQATTR HPRHRPGCTC IVCIQSPSAT KHKPTCTCNV CLAVKRFTQT 660 PMVLHGSKDS EKEAGNSVRV PSQVPYADIL RHTQTGNSGH DHKTAAGGSS ENNPDGEKPS 720 TPFKSQNIDL NTQPEREEES SSPVLESIGI TSLAPEPTQR CIRQMKLSIN GITDGNHAL

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence

MASSSGSTKV CFNSTCKEVL EVPRQGWLCR TGDFADLCDR CSSAFKDGKF CDTYHMNASG  60
WRCCESCGKQ IHCGCIVSFH MFILLDAGGI ECLNCAKTEF ILTPNPTWPS ASHFLQGPAE  120
RIRDISSKNW RSISGSGPVP WRQAPSLFNA SKVQPEFQSV LGSIDNPLAT EQLSSCSLGK  180
STANEPSEKL VNESWQVGAS EMAAARARAI GIQYDGQCNL FGDVPRQSFF YTNELPTSLS  240
SLPARMVAQD QKSEKGKVSG IHVQHLCPLP LVGKQFSNNN GSGPSLEAQA HNAKSRGETR  300
GRNQLLPRYW PRITDQELQQ ISGGTNAKIT PLFEKVLSAS DAGRIGRLVL PKKCAEAYLP  360
PISQPEGYPL VVQDLKGKDW VLQFRFWPNN NSRMYVLEGV TPCIQSMQLQ AGDTVTFSRL  420
EPEGKLVMGF RKASLASPSD QGNETVSTRN EDPSKGTISF KSRNPDGTWS EVDKISIRAK  480
RKKGAKTGSN CKQLKLNGEE ILQLNVTLEQ VQELLQPPLI NAPTIVVVEG VEFEDYQEAP  540
IIGSPAIFST NHQGSICSME VKPTPERLQH MLPMINHASS RNINSENPEP VKMMDGLDAL  600
ADLAIQDGEA IPTLSQATTR HPRHRPGCTC IVCIQSPSAT KHKPTCTCNV CLAVKRFTQT  660
PMVLHGSKDS EKEAGNSVRV PSQVPYADIL RHTQTGNSGH DHKTAAGGSS ENNPDGEKPS  720
TPFKSQNIDL NTQPEREEES SSPVLESIGI TSLAPEPTQR CIRQMKLSIN GITDGNHAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21550.1	1e-125	B3 family protein