PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992689.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NF-YC
Protein Properties Length: 262aa    MW: 29176.9 Da    PI: 4.8354
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.71.1e-55811851102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql+sfw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl
  XP_024992689.1  81 QLQSFWANQyreIENVNDFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 175
                     89******99999********************************************************************************** PP

           NF-YC  93 vdivprdelk 102
                     vdivpr+++k
  XP_024992689.1 176 VDIVPREDIK 185
                     ******9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MDLQGHGQPQ ASNIMGNVPQ LPYATNPYDS TQISGAPGRG PVVTSGGPIP ATTQPTAAQL  60
AQQQLAYQQI QQQQQQQLQQ QLQSFWANQY REIENVNDFK NHSLPLARIK KIMKADEDVR  120
MISAEAPIVF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP  180
REDIKDEAMT SMPTVTVPVG GPSDTFPYYY MPAQQSLQSG TPGMISNKPM LDPALYAQQP  240
PPYMAPAIWP QPPQQPQSPS DS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.31e-74NF-YC family protein