PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992671.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 434aa MW: 49187.7 Da PI: 4.4157

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30	1.1e-09	16	60	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +r C+ +++k+++++C ++ +lC++C + H+ H++v XP_024992671.1 16 ARACDSCGRKRARWYCAADDAFLCQSCDGSVHSAnqlagrHERVL 60 578*****************************6678888888775 PP
2	CCT	68.6	1.7e-23	373	416	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_024992671.1 373 REARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRE 416 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MMVGKKTANA VGGKTARACD SCGRKRARWY CAADDAFLCQ SCDGSVHSAN QLAGRHERVL 60 LENGSSKLFG SGIGSQEPTW HQGLTRRART PRSRSKYSLK LEGKNDVRNS SVPLVPEMGM 120 LDQVSSFDDD DEEEEEEEQL LYRVPVFDPF ETELCNASNE MERSLNFIVE NKQEETCNLD 180 DLQGFDLPTD DLELLEFAAD VESLLGKGFD DASCRIDDLG LTNDCKEEDN TNDLGICFEE 240 NRIKVEDKEV EAILDCDFDA TTETLDWDFG YESMMMIKEE EKKDVEGVAE EDTMMVPSDD 300 QCKEGTTVRK SSIILKLNYE DVIDAWADQG SPWTTGIRPE IGSDGSCWPD FMGLQWRGDS 360 SSYRSFGGSD GGREARVLRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRETFEE 420 PPAASSFPSY LIKN

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MMVGKKTANA VGGKTARACD SCGRKRARWY CAADDAFLCQ SCDGSVHSAN QLAGRHERVL  60
LENGSSKLFG SGIGSQEPTW HQGLTRRART PRSRSKYSLK LEGKNDVRNS SVPLVPEMGM  120
LDQVSSFDDD DEEEEEEEQL LYRVPVFDPF ETELCNASNE MERSLNFIVE NKQEETCNLD  180
DLQGFDLPTD DLELLEFAAD VESLLGKGFD DASCRIDDLG LTNDCKEEDN TNDLGICFEE  240
NRIKVEDKEV EAILDCDFDA TTETLDWDFG YESMMMIKEE EKKDVEGVAE EDTMMVPSDD  300
QCKEGTTVRK SSIILKLNYE DVIDAWADQG SPWTTGIRPE IGSDGSCWPD FMGLQWRGDS  360
SSYRSFGGSD GGREARVLRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRETFEE  420
PPAASSFPSY LIKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	384	400	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	4e-93	CO-like family protein