PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024992577.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24738.3 Da PI: 8.809 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.6 | 2.1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaev++iifs++gklye++s XP_024992577.1 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPRGKLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 70.8 | 4.3e-24 | 78 | 170 | 5 | 97 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++s + ++ ++l++e a + k++e L+ +R+llGe+L++ s++eL q+eqqLe+s +R++K++++ eqi++lq kek+l en +L++k XP_024992577.1 78 TDNSSSVEDVQYLKHETATMAKKVELLEVAKRKLLGEGLGTSSIEELVQIEQQLERSACIVRARKMQVYNEQIQQLQAKEKMLAAENAMLNEK 170 4556788899********************************************************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP RGKLYEFASS 60 SMQETIERYR SHAKDVQTDN SSSVEDVQYL KHETATMAKK VELLEVAKRK LLGEGLGTSS 120 IEELVQIEQQ LERSACIVRA RKMQVYNEQI QQLQAKEKML AAENAMLNEK CLVQTDQVTA 180 EIRADSRIID NGENSDVETE LFIGPPERRI KQRWLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 4e-77 | MIKC_MADS family protein |