PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992544.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 360aa MW: 40943.5 Da PI: 6.125

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9.2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d++++ G g+W+t ++ g+ R++k+c++rw +yl XP_024992544.1 14 KGPWTAEEDQKLIDYIQKNGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.5	5.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_024992544.1 67 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MGRSPCCEKN GLKKGPWTAE EDQKLIDYIQ KNGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHNPRL DLLDISSILS SSFYNQSNAN MFGVQTMVNP ELLRLAASLL SSQRDQNPSF 180 LHQNDQKPQF GQTLIQENHH HHLDQLQNHD QTLIQELPSC VPFSSDQSSQ LMEPNVDQLP 240 SSFSHFNPQN CQLNEWQNNG IGLPSSNLDN LMGMAMENYG FQGSVQSVVD PPSNLTPNDF 300 DFTSHLSNLS TPSSSPTPLN SNSNSTYING SSTEDEREIS YGSNLFKYEY QEILDSNVFM

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MGRSPCCEKN GLKKGPWTAE EDQKLIDYIQ KNGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHNPRL DLLDISSILS SSFYNQSNAN MFGVQTMVNP ELLRLAASLL SSQRDQNPSF  180
LHQNDQKPQF GQTLIQENHH HHLDQLQNHD QTLIQELPSC VPFSSDQSSQ LMEPNVDQLP  240
SSFSHFNPQN CQLNEWQNNG IGLPSSNLDN LMGMAMENYG FQGSVQSVVD PPSNLTPNDF  300
DFTSHLSNLS TPSSSPTPLN SNSNSTYING SSTEDEREIS YGSNLFKYEY QEILDSNVFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	4e-97	MYB family protein