PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992518.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27895.5 Da    PI: 9.0707
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992518.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.46e-312574150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRr g+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  XP_024992518.1 25 KRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                    79***********************************************8 PP
2K-box113.42.3e-37951896100
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     g s+ ea+a+ +qqe akL+++i nLq+++R+++Ge+L+++ +k+L++Le +Lek++++iRskKnell+++ie++qk+e el++ n+ Lr+k++e
  XP_024992518.1  95 GGSVVEANAQFYQQEGAKLRQQIANLQNQNRNIMGESLTDMPVKDLKNLEGKLEKAISRIRSKKNELLFAEIEYMQKRELELHNSNQFLRAKIAE 189
                     5568899*************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MSSFPNDSGD MSPQRKQGKG KIEIKRIENT TNRQVTFCKR RSGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVRG TIDRYKKACL DPPSGGSVVE ANAQFYQQEG AKLRQQIANL  120
QNQNRNIMGE SLTDMPVKDL KNLEGKLEKA ISRIRSKKNE LLFAEIEYMQ KRELELHNSN  180
QFLRAKIAEN ERAQQQQMSL MPGSSDYELV PPHQPFDGRN YLQPNELQSD NNYSCQDQTP  240
LQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-119MIKC_MADS family protein