PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024992515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 161aa MW: 18987.7 Da PI: 10.1284 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 14 | 65 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le+ F+++++++ +++ ++Ak lgL+ rqV +WFqN+Ra++k XP_024992515.1 14 KRFSQEQIKSLEAIFQSESKLQPRKKLQIAKDLGLQPRQVAIWFQNKRARWK 65 68*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 114.1 | 8.4e-37 | 12 | 103 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +++r+s+eq+k+LE F++e+kL+p++K ++a++Lglqprqva+WFqn+RAR+k+kql +dy+ L+ +yd+l+++ + L++++++L+ +lk+ XP_024992515.1 12 QQKRFSQEQIKSLEAIFQSESKLQPRKKLQIAKDLGLQPRQVAIWFQNKRARWKSKQLQTDYNILRLSYDSLSSRFDILQTQNQSLTLQLKK 103 789************************************************************************************99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence |
MMLDSELKII QQQKRFSQEQ IKSLEAIFQS ESKLQPRKKL QIAKDLGLQP RQVAIWFQNK 60 RARWKSKQLQ TDYNILRLSY DSLSSRFDIL QTQNQSLTLQ LKKLQQEMEK KATSSSNKSM 120 GIVVSDADSI KPPVEQSSMI HGHRDKWDDL DMSNQWWESW C |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 7e-38 | HD-ZIP family protein |