PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992511.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 463aa MW: 51542.3 Da PI: 6.9555

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992511.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.3	1.4e-13	282	327	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f +Lr+++P+ K++Ka+ L Av YIk+L XP_024992511.1 282 NHVEAERQRREKLNQRFYTLRSVVPNV-----SKMDKASLLADAVCYIKKL 327 799*********************6.....5**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MDDFLILSPS SSSSSLDLQN TTHLPCNQKL QFLLQTQPHH PWAYAIFWKT CTFNHSLTWG 60 DAHFLQNPSK PVIQSLLGPQ NPDDPEWFYV VSLTRSFTIG DASAPAKAFA SSSILWFTAA 120 DHFDCDRAKE AHIHGLQTLL YIPTSTGVVE MGSYHVIHHQ PDCDLPNQAQ LLFGGASSSS 180 SSSSPPTTTT STFFKHQVST ASPMNRISLE DMLNGESIHI IESGPPKKLG NIKTSSGTVA 240 DVVSDTASEH SDSDCQLVLA TAKKQGQKNK GRCRNVRNPA LNHVEAERQR REKLNQRFYT 300 LRSVVPNVSK MDKASLLADA VCYIKKLKEK VEELEWQVHN DQRRKSLTKV KVEEVEVEVE 360 VEVEVEVGEK MDKKLRSGGK KRMDVEVDVK MAGEDAMIRV QSGNKDWPVA KVMDALREMG 420 AEVHHASMSC VNQVMLQDVV SRIPGATQDE VKSHLFTRLN HST

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MDDFLILSPS SSSSSLDLQN TTHLPCNQKL QFLLQTQPHH PWAYAIFWKT CTFNHSLTWG  60
DAHFLQNPSK PVIQSLLGPQ NPDDPEWFYV VSLTRSFTIG DASAPAKAFA SSSILWFTAA  120
DHFDCDRAKE AHIHGLQTLL YIPTSTGVVE MGSYHVIHHQ PDCDLPNQAQ LLFGGASSSS  180
SSSSPPTTTT STFFKHQVST ASPMNRISLE DMLNGESIHI IESGPPKKLG NIKTSSGTVA  240
DVVSDTASEH SDSDCQLVLA TAKKQGQKNK GRCRNVRNPA LNHVEAERQR REKLNQRFYT  300
LRSVVPNVSK MDKASLLADA VCYIKKLKEK VEELEWQVHN DQRRKSLTKV KVEEVEVEVE  360
VEVEVEVGEK MDKKLRSGGK KRMDVEVDVK MAGEDAMIRV QSGNKDWPVA KVMDALREMG  420
AEVHHASMSC VNQVMLQDVV SRIPGATQDE VKSHLFTRLN HST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-42	bHLH family protein