PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992507.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 475aa    MW: 53763.2 Da    PI: 6.6622
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992507.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.8e-19112212198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt sd++ +  l++pk  a+++       +  ++ +++l+ +d++g  W +++ yr + +r+v+t+GW+ Fv +++L +gD ++F +  +s
  XP_024992507.1 112 FSKILTISDTNMHTGLSVPKMLAQNCfpsldlsQ--PQPNQELIAKDLHGHAWHFTHVYRVSTQRHVITGGWNAFVVSKRLVAGDALIFVR--HS 202
                     8899*******************888****9632..344569************************************************3..46 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     + el ++++r
  XP_024992507.1 203 NNELGIGIRR 212
                     7777888876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    
MASFSSHNGI NNELYKELWM ACAGPLVDIP VQGQRLQLED SVSHKLTGQQ ISELDLPHKM  60
LCQVVDSSLK VDSDSDEVFA IIKLHPFQEM VFEGADDNHQ LLQEAKPSFR AFSKILTISD  120
TNMHTGLSVP KMLAQNCFPS LDLSQPQPNQ ELIAKDLHGH AWHFTHVYRV STQRHVITGG  180
WNAFVVSKRL VAGDALIFVR HSNNELGIGI RRYRQQIPSS SSILSRESMH QGVLASVSHA  240
LYTNKEFVIY YNPRYTGVIV EETDISEDWP GSTWRSIKLS NRMSRWQLEP IQDGRSDVSE  300
LDTGSLSSRH KRLRTCDHGL MNHRANANLG DSVNPLHFHA ILSSSTDLID KGKECENPQV  360
LRLFGVNIEL VFPNSSDRVI LQMEGNVLVQ TIDVRSLGGY EALKNELEKI FKIESELHHG  420
GEKWEVVYED GEGDLMLLGD KPWREFCKIV KKMMIRGSDH QVKKMIGLGF KLYLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.12e-94ARF family protein