PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992485.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 504aa MW: 54949.9 Da PI: 5.5946

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.7	4.5e-27	87	140	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt+e+H++F++av+qL G++kA Pk+i+elm+++gLt+e+v+SHLQkYR+ XP_024992485.1 87 KPRVVWTKEMHQKFLDAVAQL-GHDKAFPKKIVELMNLPGLTRENVASHLQKYRM 140 79*****************.******************************7 PP
2	Myb_DNA-binding	40.1	8.2e-13	89	139	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r WT+e +++++dav+qlG + +k+I + m+ g+t++++ s++qky+ XP_024992485.1 89 RVVWTKEMHQKFLDAVAQLGHDkaFPKKIVELMNlPGLTRENVASHLQKYR 139 678***********************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MSPDNDDIKN ASISGGNGVT VYIMKSLSMN DVNNLWATAL AREKGKTESS SGKLVHVENG 60 SSSVASEACK RTRTVEINEE NGNVEKKPRV VWTKEMHQKF LDAVAQLGHD KAFPKKIVEL 120 MNLPGLTREN VASHLQKYRM CMKRAQEGFT GPSYDFIDPF GFNASQRNFQ QSHWNPFGIG 180 SRNATTSHLG LNCYGSRLGM PPDISFLNTI RLRPDHNFRV YGDEKKSVLL SIGDNRASSN 240 TNFAGFRLAG DGKSVEFGQH SHLSDGSRII RENGSYIQQQ HSLSEVGNDD SSHCPSFSAS 300 FTSGAPPGTN WADLIRFSSN HQQQSSIAAL LDVKSMPTIL TQPQPPPPVA PPGSDWNQVA 360 SFTQQQSSLS PPWSNWAEPL KFPCQQSSIT SLQGIDQTKT AIMTPLQPGA APPGTEWDEA 420 VSFTPPESAA PLWTDWTEPA SGSSQRPAAS GNDTNANSEI FSDFTSCSLP PEFRQLGMVG 480 GDDGVDATTI CIFDDLLFDR QDLT

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MSPDNDDIKN ASISGGNGVT VYIMKSLSMN DVNNLWATAL AREKGKTESS SGKLVHVENG  60
SSSVASEACK RTRTVEINEE NGNVEKKPRV VWTKEMHQKF LDAVAQLGHD KAFPKKIVEL  120
MNLPGLTREN VASHLQKYRM CMKRAQEGFT GPSYDFIDPF GFNASQRNFQ QSHWNPFGIG  180
SRNATTSHLG LNCYGSRLGM PPDISFLNTI RLRPDHNFRV YGDEKKSVLL SIGDNRASSN  240
TNFAGFRLAG DGKSVEFGQH SHLSDGSRII RENGSYIQQQ HSLSEVGNDD SSHCPSFSAS  300
FTSGAPPGTN WADLIRFSSN HQQQSSIAAL LDVKSMPTIL TQPQPPPPVA PPGSDWNQVA  360
SFTQQQSSLS PPWSNWAEPL KFPCQQSSIT SLQGIDQTKT AIMTPLQPGA APPGTEWDEA  420
VSFTPPESAA PLWTDWTEPA SGSSQRPAAS GNDTNANSEI FSDFTSCSLP PEFRQLGMVG  480
GDDGVDATTI CIFDDLLFDR QDLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-26	ARR-B family protein