PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992479.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

TCP

Protein Properties

Length: 309aa MW: 33354.7 Da PI: 10.2699

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.3	2.3e-37	71	166	2	95
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgkaaksa 94 + ++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlq a+p+i+++tgt++++a ++ + + ++++ ++++aa+s+ XP_024992479.1 71 PSRRSSTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIQWLLQHAEPSIIAATGTGTIPAIAMsvNGTLKIPATATTTAAAAATST 165 57899***********************************************************9999955532111111111122222333333 PP TCP 95 a 95 + XP_024992479.1 166 T 166 3 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MTSPSPPPTP TPSPSTTQQP PPVTEPQPLQ TDVSPPGFPL VPLKKEPFLE EHQLCETLPL 60 PPPPAKSQQP PSRRSSTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIQWL 120 LQHAEPSIIA ATGTGTIPAI AMSVNGTLKI PATATTTAAA AATSTTITDK KRKLPSDFDI 180 NRNEDTPTTT TTTTVLAPLM TTNTTTGQPQ SFVPVWAIPF NGTTAFWALQ PSATPFLNIS 240 SRPISFFTSG DQKPTSITTT NSISSIPTTT SAATRTQPPR GFPANLDDRK VERKEFVFIQ 300 ANHQTPSEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	5e-37	TCP family protein