PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992468.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

SBP

Protein Properties

Length: 396aa MW: 43420.5 Da PI: 7.7

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.1	7.8e-41	193	268	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++ l++akey++rhkvCe+hskap+v+v gl+qrfCqqCsrfh ++efDe+krsCrrrL++hn+rrrk XP_024992468.1 193 RCQVEGCHVALTNAKEYYKRHKVCEIHSKAPKVVVLGLQQRFCQQCSRFHGVTEFDEAKRSCRRRLEGHNQRRRKG 268 6*************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MESGWRNPFN SSCSGGDDGG GGGGDDSVGQ NGNFANSAWD IWDIGTTTTT TATTTTTGGT 60 RYDWSNHGVS SIPAVTSSAA RVPEESVVHA LLFGVADSND GGVIHLQDNR RLYGGIGSIN 120 HRIPDPHMMC LKLGKRHYCE DAVVPDRHVL AAESSFSSTK RAGKPPYPYY VCDSTTTAIP 180 GVRTPSSPAT VARCQVEGCH VALTNAKEYY KRHKVCEIHS KAPKVVVLGL QQRFCQQCSR 240 FHGVTEFDEA KRSCRRRLEG HNQRRRKGTL PSSLHKRFQH SHGCALSLLS SPKIEPWISS 300 GDLSSRCSAA LCELIAANRA TTVVGHLWNQ NSSHQPVVED TIQTLPNTQM WDRFNDKDTS 360 MTLDLMQAPA LDVGLLSMKE KAKDHEDWND YCWSAF

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MESGWRNPFN SSCSGGDDGG GGGGDDSVGQ NGNFANSAWD IWDIGTTTTT TATTTTTGGT  60
RYDWSNHGVS SIPAVTSSAA RVPEESVVHA LLFGVADSND GGVIHLQDNR RLYGGIGSIN  120
HRIPDPHMMC LKLGKRHYCE DAVVPDRHVL AAESSFSSTK RAGKPPYPYY VCDSTTTAIP  180
GVRTPSSPAT VARCQVEGCH VALTNAKEYY KRHKVCEIHS KAPKVVVLGL QQRFCQQCSR  240
FHGVTEFDEA KRSCRRRLEG HNQRRRKGTL PSSLHKRFQH SHGCALSLLS SPKIEPWISS  300
GDLSSRCSAA LCELIAANRA TTVVGHLWNQ NSSHQPVVED TIQTLPNTQM WDRFNDKDTS  360
MTLDLMQAPA LDVGLLSMKE KAKDHEDWND YCWSAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	3e-35	SBP family protein