PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992287.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family TCP
Protein Properties Length: 403aa    MW: 46095.8 Da    PI: 8.0668
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP135.64.2e-42922392134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa................seceaessss 80 
                      gkkdrhskihT++g+RdRR+Rls+++a++fFdLqd LGfdk+sktieWL+ ++++aike +++ ++++                s         
  XP_024992287.1  92 VGKKDRHSKIHTAQGLRDRRMRLSLHIARKFFDLQDLLGFDKASKTIEWLFCKSNKAIKEVAENFNPQHtnqslsvemermhslmS--------- 177
                     58**************************************************************4444321112222222222222......... PP

             TCP  81 sasnsssg...............kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                            +                ++++++ +++++++  +++ la+e+r +ararar+rtre+ +ik+
  XP_024992287.1 178 -------EceagfsseikaatdkLENTKEEIQNRESRRRVQNHYLARETRDQARARARDRTRERLMIKE 239
                     .......0333444455566665334444456666666666899********************99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    
MEHMCSSKRE ECLLIDPNKE KGHGILNSCH EEEPPLFRGF PSPFFDEIST TPMLIGSHTN  60
QRHLICSPNK PLKNITHEPS SESNRLKKTS NVGKKDRHSK IHTAQGLRDR RMRLSLHIAR  120
KFFDLQDLLG FDKASKTIEW LFCKSNKAIK EVAENFNPQH TNQSLSVEME RMHSLMSECE  180
AGFSSEIKAA TDKLENTKEE IQNRESRRRV QNHYLARETR DQARARARDR TRERLMIKEL  240
EKSKQLFGRN PKDEIYKLGI GYAASLNDHN VEKLGYRSSP SQPIQQEASS PILEHSGTHH  300
LLREHLQLAN INVDSFENYS GSIVGASKYC STLINHNTPA GWQNSRDGFL GIPGEWDADN  360
FITESCNYGM VPLTGDIYEQ NPSSFFMSIT TNILHFQSQN QGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224234RARARDRTRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.22e-27TCP family protein