PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992263.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 541aa MW: 58068.9 Da PI: 5.9183

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992263.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.7e-09	359	407	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_024992263.1 359 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 407 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MAGEDEIEGG NRDEEQVHFH SANLSSDWPF NGPNDLTNTS MSMITSSNPM NNTSCSSAPM 60 IDSFCHTAPT VWDHHPTNSQ NLGAFCDMNL QNNAATSSSS LGFRKGNLVP ARNLDMCWAP 120 ANSAIKRGGM FLPPAASNIL PHSLSQFPAD SGFIERAARL SSFSAGNFED MINPFGSVPE 180 SSLSPYSSRA MQGQPQDGFV GNGFKSASAQ GSKDMPLVVD CGGANDGSQS KNERQSESFV 240 RSVHEAKQGG SGFSGNNVAS EAEFSEGGGG QDDNSNEGLD SKKRRRGDQD TDYNQVKRSP 300 QTPSEATKNN TEVQQKGDNN PNSVANKSSG KHGKQVSQSS DIQKEEYIHV RARRGQATNS 360 HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV 420 NPRMDFNIEG LLAKDMLESR GGSSGTLGFG PDMAMPYTPN SSQMAIMQGG LSGLGSSSDA 480 VRRTINSHLM AVGGYKDPTS QVPSSWDDEL HNIVQMGLNP STPISSQNLG STPPGHLKAE 540 P

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MAGEDEIEGG NRDEEQVHFH SANLSSDWPF NGPNDLTNTS MSMITSSNPM NNTSCSSAPM  60
IDSFCHTAPT VWDHHPTNSQ NLGAFCDMNL QNNAATSSSS LGFRKGNLVP ARNLDMCWAP  120
ANSAIKRGGM FLPPAASNIL PHSLSQFPAD SGFIERAARL SSFSAGNFED MINPFGSVPE  180
SSLSPYSSRA MQGQPQDGFV GNGFKSASAQ GSKDMPLVVD CGGANDGSQS KNERQSESFV  240
RSVHEAKQGG SGFSGNNVAS EAEFSEGGGG QDDNSNEGLD SKKRRRGDQD TDYNQVKRSP  300
QTPSEATKNN TEVQQKGDNN PNSVANKSSG KHGKQVSQSS DIQKEEYIHV RARRGQATNS  360
HSLAERVRRE KISERMKFLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV  420
NPRMDFNIEG LLAKDMLESR GGSSGTLGFG PDMAMPYTPN SSQMAIMQGG LSGLGSSSDA  480
VRRTINSHLM AVGGYKDPTS QVPSSWDDEL HNIVQMGLNP STPISSQNLG STPPGHLKAE  540
P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-102	bHLH family protein