PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992248.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 428aa MW: 48294.9 Da PI: 6.6244

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.3e-52	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++++ XP_024992248.1 15 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKHDPWDLPKLAMTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYAS 108 579*************************.89***********8777899**********************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg ktdW+mhe+rl XP_024992248.1 109 eGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142 56677*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MEERSENGEK IEEIMLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIKQL DIYKHDPWDL 60 PKLAMTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYASEG SKCIGLKKSL 120 VFYKGRAAKG IKTDWMMHEF RLPSLTDHTT PSKRFLEKTI PANDSWAICR IFKKASSTAQ 180 RTLSHSWVSP ILPETTSSDH NILTQHGISS NDFQHSSITS FSPNMDHTGS NNMPVYKPFN 240 IDPTVPPTVT TTNNKPPQNN SISSSEDLNY STSYPFLFQE PNYGSKSSTV DASSLLLNIP 300 NSIFGDFDKA SAEGLDYITN GLHHDHHQQY NYNGCCFSIT NLPVEIQENC VQEQEGTASM 360 TTMKGPGPTT TETVDTHFED QWGRSISSGG YPFMSLPLGL QDAWKSSFLC DSSSEISSSF 420 STTNKCYI

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MEERSENGEK IEEIMLPGFR FHPTDEELVG FYLKRKIQQR PLSIELIKQL DIYKHDPWDL  60
PKLAMTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYASEG SKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSLTDHTT PSKRFLEKTI PANDSWAICR IFKKASSTAQ  180
RTLSHSWVSP ILPETTSSDH NILTQHGISS NDFQHSSITS FSPNMDHTGS NNMPVYKPFN  240
IDPTVPPTVT TTNNKPPQNN SISSSEDLNY STSYPFLFQE PNYGSKSSTV DASSLLLNIP  300
NSIFGDFDKA SAEGLDYITN GLHHDHHQQY NYNGCCFSIT NLPVEIQENC VQEQEGTASM  360
TTMKGPGPTT TETVDTHFED QWGRSISSGG YPFMSLPLGL QDAWKSSFLC DSSSEISSSF  420
STTNKCYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-109	NAC family protein