PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024992214.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Dof

Protein Properties

Length: 430aa MW: 47387.4 Da PI: 7.6812

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024992214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.4e-38	112	172	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fC +C+ryWt+GG++rn PvG+grrknk+ss XP_024992214.1 112 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCNNCQRYWTAGGTMRNTPVGSGRRKNKSSS 172 7899******************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MSQVKDPAIK LFGKTIQLLH PHPHHLLDKP NQQQKDCSQH IKETLDKEHA TTQTEDTCSH 60 PSAEELIDPS TSSGINDDPK TPTADKETSS KSTPKKENPT GNSNSEEKPK KPDKILPCPR 120 CNSMDTKFCY YNNYNVNQPR HFCNNCQRYW TAGGTMRNTP VGSGRRKNKS SSSASYYRHL 180 IVSEALQKTN GSVLNFGSDV PLCESMNSAL NFSDKSQKSE DDQSAFCSSS ASNSAEKGPN 240 RSVKNFQGYP LQIPCFPAPP WPYPWNSAQF RPPLVPPTNL GPPGFPVSYY PTLQYWGCTV 300 EPSPWSMPWV TPPPDQIAPT SPLGKHSRDG NLLSPPSNSG NEDLSRDNDS ENGILIPKTL 360 RINDPNEAAK SSLWSTLKDE NGSNSINGGN LYKAFKSKGD DKNEVADSSL VNLQSNPAAL 420 SRSLNFRETS

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MSQVKDPAIK LFGKTIQLLH PHPHHLLDKP NQQQKDCSQH IKETLDKEHA TTQTEDTCSH  60
PSAEELIDPS TSSGINDDPK TPTADKETSS KSTPKKENPT GNSNSEEKPK KPDKILPCPR  120
CNSMDTKFCY YNNYNVNQPR HFCNNCQRYW TAGGTMRNTP VGSGRRKNKS SSSASYYRHL  180
IVSEALQKTN GSVLNFGSDV PLCESMNSAL NFSDKSQKSE DDQSAFCSSS ASNSAEKGPN  240
RSVKNFQGYP LQIPCFPAPP WPYPWNSAQF RPPLVPPTNL GPPGFPVSYY PTLQYWGCTV  300
EPSPWSMPWV TPPPDQIAPT SPLGKHSRDG NLLSPPSNSG NEDLSRDNDS ENGILIPKTL  360
RINDPNEAAK SSLWSTLKDE NGSNSINGGN LYKAFKSKGD DKNEVADSSL VNLQSNPAAL  420
SRSLNFRETS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.1	6e-39	Dof family protein