PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024992062.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 735aa    MW: 81236.9 Da    PI: 6.7851
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024992062.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.3e-202479156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t+ q+++Le+ F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  XP_024992062.1 24 KKRYHRHTALQIQILESTFKECPHPDEKTRMQLSRELGLAPRQIKFWFQNRRTQMK 79
                    688899***********************************************998 PP
2START176.71.4e-552374622206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                     +a  a++el+++ + +ep+W++s+  ++g++vl     ++v             ++ea+r+sgvv m++ +lv  +ld+  +W   ++    ka 
  XP_024992062.1 237 IASNAMDELIRLLQTNEPLWTQSR--KDGTDVLNLDNYKRVfprpndnlknpnVRIEASRVSGVVMMNSLQLVDMFLDST-KWIDIFPtivsKAR 328
                     67899*******************..5555555555444445555568999999**************************.***99999999*** PP

                     EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
           START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                     t+evissg      g lqlm+ elq+lsplv+ R f+f+R+++q ++g+w+iv vS + +q++p  +s  +a++lpSg+li++++ng+skvtwve
  XP_024992062.1 329 TIEVISSGllssqnGSLQLMYEELQVLSPLVStRQFYFLRFCQQIEQGSWAIVNVSYNLPQYNPYAQSQFKAHRLPSGCLIQEMPNGYSKVTWVE 423
                     *********************************************************************************************** PP

                     -EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 169 hvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     h+++++  p + l+r +++sgla+gak+w+a+lqr ce+
  XP_024992062.1 424 HTEVEELAPiDRLYRDFIHSGLAFGAKRWLACLQRACER 462
                     *************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    
MDYGSGGGPG GSGGGSHHDS SDKKKRYHRH TALQIQILES TFKECPHPDE KTRMQLSREL  60
GLAPRQIKFW FQNRRTQMKA QHERADNCAL RAENDKIRYE NIVIREALKN LVCPTCGGPP  120
IGEDCYFDEQ KLRFENAQLK EELDRVSSIA AKYIGRPMSQ LPPVQPIHMS SLDLSMATYG  180
GSTANRMVMM NSAGPSLDLD LLTGSAMGAS SSSINPDPPF HSSLHLSDMD KSVIADIASN  240
AMDELIRLLQ TNEPLWTQSR KDGTDVLNLD NYKRVFPRPN DNLKNPNVRI EASRVSGVVM  300
MNSLQLVDMF LDSTKWIDIF PTIVSKARTI EVISSGLLSS QNGSLQLMYE ELQVLSPLVS  360
TRQFYFLRFC QQIEQGSWAI VNVSYNLPQY NPYAQSQFKA HRLPSGCLIQ EMPNGYSKVT  420
WVEHTEVEEL APIDRLYRDF IHSGLAFGAK RWLACLQRAC ERSASLMMAN SSSHDLGGVI  480
PSAEGKRSMM KLSQRMVNNF CSSINPSNGH QWTSLSGLNE FEVRAFLHKS NDPGQPNSMV  540
LSASTTIWLP VPPQNVFDFF RDGRTRPQWD VLSNQNPVQE VAHIANGTHP GNCISVLRAY  600
SPSQNSMLIL QESCTDASGS LVIYCPVDLP AINIAMNGED PSYIPLLPSG FIITTDGHQE  660
ITSAGGASTS NMTDHGADHR GSTSTGSLIT VVFQIQVSSL PAAKMSPESL TTINNLVTNT  720
VHQIKASFNC PSTTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein