PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991948.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Nin-like

Protein Properties

Length: 323aa MW: 37019.3 Da PI: 7.704

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.6	3.9e-26	196	245	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ ledl+kyF+lpi +A+k+L+v+lTvLK++CR++GI+RWPhRkiksl XP_024991948.1 196 ASLGLEDLAKYFDLPIIEASKNLKVGLTVLKKKCREFGIPRWPHRKIKSL 245 6789********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MASPSQHCPS SSLKALVAFR NLICPELIRT VHLYRSEGGG EEVEVEREYV FHKEGDYEEI 60 SFCKVFTLQK FEISSHFEGL VNGVWLCIYV FDAACCSPAD IDRLPTVLTI SRNRKLDSIP 120 TLANDLQTVT HLSSEVIKQC KSESEEDKEN RYKNHHICDL DLNSLPSGLS ENEESDQSTT 180 DGSRKKKRRA ATKDIASLGL EDLAKYFDLP IIEASKNLKV GLTVLKKKCR EFGIPRWPHR 240 KIKSLDGLIS DLQEEVKRQE EEDAGAALAV AKRQKMIESE KERIEKKPFM DIQRETKKFR 300 QDIFKKRHRA RVLESQCRTL SLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	189	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-78	Nin-like family protein