PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991925.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 822aa    MW: 88407.4 Da    PI: 6.432
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991925.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-20119174156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t++q++eLe+ F+ n++p+++er  L kkl+L+ +qVk+WFqNrR+++k
  XP_024991925.1 119 RQKYHRHTPYQIQELEASFKDNPHPDEKERLALGKKLNLENKQVKFWFQNRRTQMK 174
                     678899***********************************************999 PP
2START157.88.4e-503355531206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     e+a+ a++el+k+ +a++p+W        e ++ de++++f+   +     + +ea+rasg+v  ++  lve lld + +W+ ++     + +t+
  XP_024991925.1 335 EIALGAMDELMKLGQANSPLWIGNMesggEVLDLDEYVRTFPLCLGmkphgYVSEASRASGMVMINSLALVEALLDAN-RWKDMFLgiigSSSTI 428
                     57899****************9888788888999999999966444889999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     evis g      g++qlm+ae q+ splvp R + f+R++rq+ +g+w++vd Svd  ++         +++lpSg+++++++ng+skv w+eh+
  XP_024991925.1 429 EVISGGtgdsrnGVVQLMQAEIQLVSPLVPaRQVRFLRFCRQQAEGVWAVVDLSVDAGREGFI------SRRLPSGCIVHDMPNGYSKVMWIEHT 517
                     **********************************************************99875......569*********************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++++h  +r+l++sgl +ga++w +tlqr+ce+
  XP_024991925.1 518 EYDESVVHHQYRPLLRSGLGFGAQKWISTLQRHCEC 553
                     **********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    
MSFGGFYGGG GGGGDSRMVV ADGSFNNMPL HRAPISQPHL ITSTIPQPIY NSQSLSLALK  60
PKMEGLGEIG LIGENFEGNL GRVRGDGSES RSGGSDNLEG ASGDEQDVPT GPSSSSRRRQ  120
KYHRHTPYQI QELEASFKDN PHPDEKERLA LGKKLNLENK QVKFWFQNRR TQMKTQLERH  180
ENAILKQEND KLRIENIAMK EAIRAPVCNN CGGQAILGDI SIDEHHLRIE NARLRDELSR  240
ISILANKFLG RPLSSFSGSM PHGMANSNLE LAVGRNGYGG LNPMDVGLPM GLDYNNGISN  300
ALPLMSPSRM GMAAGGGGGG GGGIDIPYEK NVFLEIALGA MDELMKLGQA NSPLWIGNME  360
SGGEVLDLDE YVRTFPLCLG MKPHGYVSEA SRASGMVMIN SLALVEALLD ANRWKDMFLG  420
IIGSSSTIEV ISGGTGDSRN GVVQLMQAEI QLVSPLVPAR QVRFLRFCRQ QAEGVWAVVD  480
LSVDAGREGF ISRRLPSGCI VHDMPNGYSK VMWIEHTEYD ESVVHHQYRP LLRSGLGFGA  540
QKWISTLQRH CECVATIMSS DAAIDDSPVL STGGRRSLTS LAQRMTANFC AGVCATGGHK  600
WEVIGNAAEA AKIMIRKSLN NPGDPSGAVL SATMSVWMPM PHQSLFALML NEELRSQWDV  660
LSHGSAMQNM IRFSKGQDLG NPNTISLLRA NTTGANANQN TVLVLQESTT DVTGSLIVYA  720
AVDVQSITVV MNGGDSSCVA LLPSGFAIVP DCVAESGAPV TKAGSEGGSL LTVGFQILVN  780
DLPSSKLTME SINTVINLIS RTIQGIKEVV HSNQQGRHAA DQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein