PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991803.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NF-X1

Protein Properties

Length: 1086aa MW: 117989 Da PI: 8.0637

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	20.6	9.9e-07	415	433	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H+C+++CH+G+C pC+ XP_024991803.1 415 CGLHRCKETCHPGECAPCR 433 ******************6 PP
2	zf-NF-X1	17.5	8.9e-06	514	533	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++lCH G CppCp+ XP_024991803.1 514 CGQHDCESLCHSGHCPPCPE 533 ******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1086 aa Download sequence
MSSHVRNDRR DNRSRFPRRQ EWIPRGSTAT VSTTVVDASS PSTVASNPDG NSEEPNIRSG 60 PQPQNGLNRG NFGVQRRQHI ARPVNQSRDR RRDPLCEERV SKGTTGALPQ LVQEIQDKLL 120 KGTIECMICY DMVRRSAPIW SCSSCFSIFH LHCIKKWARA PTSIDLSAEK NQGFNWRCPG 180 CQSVQLTSSK DIRYVCFCGK RQEPHSDPYL TPHSCGEPCG KPLEKEVPGS GVSRDDLCPH 240 RCVLQCHPGP CPPCKAFAPP RICPCGKKII TTRCSDQKSV LTCGQRCGKP RKCLRHRCEK 300 TCHVGPCDAC EVLIDASCFC KKKTEAVLCG DMAVKGEVNV EDGIFSCSSP CGKPLACGNH 360 VCKEICHPGL CGDCDLLPGR ITSCYCGKSS LQEERQSCLD PIPTCSQICD KTLSCGLHRC 420 KETCHPGECA PCRVMVSQKC RCGSTSRIVE CFNTTRGVEV FTCDKPCGRK KNCGRHRCSE 480 RCCPLSNSSN ASRPLIQGWD PHLCSKPCEK KLRCGQHDCE SLCHSGHCPP CPETIFTDLT 540 CACGRSSIPP PLPCGTPPPS CQYPCSVPQP CGHVSSHSCH FGDCPPCSVP IPKECIGGHV 600 VLRNIPCGSK DIRCNKLCGK TRQCGMHACL RTCHPSPCDS SGGSTSGVKA SCGQTCGAPR 660 RDCRHTCTAL CHPNNACPDA RCEFPVTIAC SCGRITATVP CDAGSSSNSG YNADTLLEAS 720 AVQKLPVPLQ PIEANGKKIP LGQRKLMCDD ECSKMERKKV LADAFGVTSP NLEALHFGEN 780 VMVSDMLGDL FRRDPKWVLS VEERCKMLVV GRGRGGAAAL KVHVFCPMLK EKRDAVRLIA 840 ERWKLSINAA GWEPKRFVVV HVTPKSKAPA RILGSKGMNP TNLIHPPNFD PVVDMDPRLV 900 VALFDLPGDA DVSALVLRFG GECELVWLND KNALAVFSDP ARAATAMRRL DHGSVYYGAT 960 VLATSTGGNA WGSTTPKDNH MQTNPWKKAV VQESSSDWGE SSWNVAEENP ETTTTSSSTS 1020 SSWKVKEAAP ITASANRWSI LESEASRSEE SGKAIGGSNV MNEPSSSGSN KQDEDSDVVD 1080 WETAYD

Sequence ? help Back to Top

Protein Sequence Length: 1086 aa Download sequence

MSSHVRNDRR DNRSRFPRRQ EWIPRGSTAT VSTTVVDASS PSTVASNPDG NSEEPNIRSG  60
PQPQNGLNRG NFGVQRRQHI ARPVNQSRDR RRDPLCEERV SKGTTGALPQ LVQEIQDKLL  120
KGTIECMICY DMVRRSAPIW SCSSCFSIFH LHCIKKWARA PTSIDLSAEK NQGFNWRCPG  180
CQSVQLTSSK DIRYVCFCGK RQEPHSDPYL TPHSCGEPCG KPLEKEVPGS GVSRDDLCPH  240
RCVLQCHPGP CPPCKAFAPP RICPCGKKII TTRCSDQKSV LTCGQRCGKP RKCLRHRCEK  300
TCHVGPCDAC EVLIDASCFC KKKTEAVLCG DMAVKGEVNV EDGIFSCSSP CGKPLACGNH  360
VCKEICHPGL CGDCDLLPGR ITSCYCGKSS LQEERQSCLD PIPTCSQICD KTLSCGLHRC  420
KETCHPGECA PCRVMVSQKC RCGSTSRIVE CFNTTRGVEV FTCDKPCGRK KNCGRHRCSE  480
RCCPLSNSSN ASRPLIQGWD PHLCSKPCEK KLRCGQHDCE SLCHSGHCPP CPETIFTDLT  540
CACGRSSIPP PLPCGTPPPS CQYPCSVPQP CGHVSSHSCH FGDCPPCSVP IPKECIGGHV  600
VLRNIPCGSK DIRCNKLCGK TRQCGMHACL RTCHPSPCDS SGGSTSGVKA SCGQTCGAPR  660
RDCRHTCTAL CHPNNACPDA RCEFPVTIAC SCGRITATVP CDAGSSSNSG YNADTLLEAS  720
AVQKLPVPLQ PIEANGKKIP LGQRKLMCDD ECSKMERKKV LADAFGVTSP NLEALHFGEN  780
VMVSDMLGDL FRRDPKWVLS VEERCKMLVV GRGRGGAAAL KVHVFCPMLK EKRDAVRLIA  840
ERWKLSINAA GWEPKRFVVV HVTPKSKAPA RILGSKGMNP TNLIHPPNFD PVVDMDPRLV  900
VALFDLPGDA DVSALVLRFG GECELVWLND KNALAVFSDP ARAATAMRRL DHGSVYYGAT  960
VLATSTGGNA WGSTTPKDNH MQTNPWKKAV VQESSSDWGE SSWNVAEENP ETTTTSSSTS  1020
SSWKVKEAAP ITASANRWSI LESEASRSEE SGKAIGGSNV MNEPSSSGSN KQDEDSDVVD  1080
WETAYD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein