PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991742.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family NAC
Protein Properties Length: 303aa    MW: 34417.9 Da    PI: 7.5377
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991742.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.54.3e-5651311129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL +kv+++++++ ++++evd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat +gyWk+tgkdke+++ 
  XP_024991742.1   5 LPPGFRFHPTDEELITFYLSHKVSDSTFTC-KAVAEVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATVAGYWKTTGKDKEIFR- 97 
                     79***************************9.88***************999999****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +g l+g+kktLvfy+grapkgekt+Wvmheyrle
  XP_024991742.1  98 GGILIGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 131
                     ********************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MEDTLPPGFR FHPTDEELIT FYLSHKVSDS TFTCKAVAEV DLNKCEPWDL PAKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TVAGYWKTTG KDKEIFRGGI LIGMKKTLVF YRGRAPKGEK  120
TNWVMHEYRL ETAHAFKPNK EEWVVCRIFQ KSTTLKKPMA TASSPQSMGS PCDTNAMAND  180
YGDIELPNLS GIGNSNISLQ NYGIESNVNT NMNLNMSLAS GLPSLAWPSN LLTSNLSMNA  240
LLLKALQLRT YQQRDAANFD YQFLHDASPS LQASSPRTYE SLQQQQQQVQ HQEEQPFNLD  300
SMW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-113NAC family protein