PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991728.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 630aa    MW: 68600.6 Da    PI: 7.4976
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3304.5e-1012636292373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL ++A ++++g++  a ++L+r+++ ++  g+p qRl +y++ AL++r++          + +++se   +e++ +++l+++ sP++k++++
  XP_024991728.1 263 KQLLSDAASVITDGKTDSAVEILTRVNQVSNALGTPEQRLSFYMAAALRSRMNA---------NLTTASELYGKEHILSTQLLYDKSPCFKLAFM 348
                     58999************************************************9.........4555555569********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     +aN++Ile  + e+++H++Dfdi+qG+Q++ Ll+++a +R+   e p sl +T++ +  +g +e+l+ +g+ L+++ ++lgv f+fn+  + +l+
  XP_024991728.1 349 AANNTILELGQAEKKLHVVDFDIGQGVQYVYLLHEIAaARKvdkETPISLTLTTFTDFGNGGAERLKLVGDGLKSLSNKLGVCFSFNI-SSLKLS 442
                     ************************************977888844455*********9999**************************9.899*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     dl+ ++L v++gE l+Vnl+++l++l+desv++e+ rdevL+ vk+lsP +v+vveqe++ n++sF  r+ +a+ yy al++sl+a+++r++ er
  XP_024991728.1 443 DLNQSALMVESGEILVVNLAFKLYKLPDESVTTENLRDEVLRRVKGLSPALVTVVEQELNGNTASFEMRVNQACGYYGALLESLDATMGRDNPER 537
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +k+E+  l+r+ vn vaceg++r+er+e ++kWr+r+++aGF+p  ls+  a++  l l+     + g++v+ee g ++lgW++r+L+++SaW
  XP_024991728.1 538 VKIEEG-LSRKMVNSVACEGRDRVERCEVFGKWRARMRMAGFEPTVLSQLRAESLLLKLNSGTrgNPGFTVKEEAGGICLGWMGRTLTVASAW 629
                     ******.******************************************9888877777654436889************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    
MSSGFPGGHP DYFNINTTTG AGRSMSMMNL NNNPQGSYRS PLAGILADPS SQIGLRRPDL  60
MGKRSLAEFQ HHQQLQQQAA FFLRNVKPRP YNQHVSPLSL MDFSNSPEVS SVSNISSSSL  120
SSVPRYGVPV LQQVRPPTAQ AFNLGNGNFN GVMGSYQHNN RSNFSRISLP NLAAKQSPAT  180
QETEGKMMKR LQELEKQLLL DDEDGENDVS GVTNSEWSET IQNILGSTPV QKPDNTVSPS  240
PTSSSSSSCA SSSASPATTV CPKQLLSDAA SVITDGKTDS AVEILTRVNQ VSNALGTPEQ  300
RLSFYMAAAL RSRMNANLTT ASELYGKEHI LSTQLLYDKS PCFKLAFMAA NNTILELGQA  360
EKKLHVVDFD IGQGVQYVYL LHEIAAARKV DKETPISLTL TTFTDFGNGG AERLKLVGDG  420
LKSLSNKLGV CFSFNISSLK LSDLNQSALM VESGEILVVN LAFKLYKLPD ESVTTENLRD  480
EVLRRVKGLS PALVTVVEQE LNGNTASFEM RVNQACGYYG ALLESLDATM GRDNPERVKI  540
EEGLSRKMVN SVACEGRDRV ERCEVFGKWR ARMRMAGFEP TVLSQLRAES LLLKLNSGTR  600
GNPGFTVKEE AGGICLGWMG RTLTVASAWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-134GRAS family protein