PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991726.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 213aa MW: 23264 Da PI: 7.6795

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991726.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.9	3.2e-42	57	156	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++C+lapyfp ++p+kf ++h++FGasn++kll++lpe+ r da+ss+vyeA+ar+rdPvyG++g+i +lq+q+++l+ ela XP_024991726.1 57 PCAACKILRRRCIEKCMLAPYFPPNDPHKFTIAHRVFGASNIIKLLQELPESSRADAVSSMVYEANARLRDPVYGCAGTICHLQKQISELQGELA 151 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_024991726.1 152 KAQAE 156 *9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence
MEGCLKTAVA VAVAATPMTI STDSAYSRSH SPPSSQLSPT SVLVLPPPPP HPVVLSPCAA 60 CKILRRRCIE KCMLAPYFPP NDPHKFTIAH RVFGASNIIK LLQELPESSR ADAVSSMVYE 120 ANARLRDPVY GCAGTICHLQ KQISELQGEL AKAQAEMVNL QCRQSNILTL IRMQMDQPPL 180 PVSPPLQQQQ TLYDNICFFD DNANLGSLGP LWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-67	LBD family protein