PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024991500.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

GeBP

Protein Properties

Length: 398aa MW: 44723.5 Da PI: 4.504

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024991500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	105.3	4.6e-33	113	214	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 lfqrlw++eDei lLqG+ d++++ + + ++d++afy+++k++++++++k+qlveK+rrLKkK+++ +k++sgk+ +f+++hdq +f+ XP_024991500.1 113 LFQRLWTDEDEIELLQGFFDYTNQLVVnnsfhhHHHHDTTAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRNVLSKISSGKDYVFKTPHDQITFD 207 79*****************9986655445545667****************************************************** PP DUF573 91 lskkiWg 97 +s kiW XP_024991500.1 208 ISCKIWS 214 ****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MASQEDDHIT TVYGEDLDED DDTEDEDLTL RNQNVEEDDV DLVDDEEEDD SMSSGVGEVT 60 IAVPGVPTAA DTDTVAATPT AAITSTVDVT PVPRSDVVLE QKKIMPLDES RRLFQRLWTD 120 EDEIELLQGF FDYTNQLVVN NSFHHHHHHD TTAFYDQIKN KLQLDFNKNQ LVEKLRRLKK 180 KYRNVLSKIS SGKDYVFKTP HDQITFDISC KIWSSEAAVL STPASVASAD VGRFEDEEPS 240 NPYPNLNLTF NLNEQNGNGS AYPNSSEKKI PRSRKRSRSS GVKIEEKTSH QQPAPAVGVG 300 ASNSSNPTPN LVEETVKSCL LPLFKELLDS SQNGLRGSSR GLMNLDPFGG SMNLPFGDIT 360 DEKWRKQHIL ELEVCSKRLE LVQDQIKSQL EELRSMRR

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MASQEDDHIT TVYGEDLDED DDTEDEDLTL RNQNVEEDDV DLVDDEEEDD SMSSGVGEVT  60
IAVPGVPTAA DTDTVAATPT AAITSTVDVT PVPRSDVVLE QKKIMPLDES RRLFQRLWTD  120
EDEIELLQGF FDYTNQLVVN NSFHHHHHHD TTAFYDQIKN KLQLDFNKNQ LVEKLRRLKK  180
KYRNVLSKIS SGKDYVFKTP HDQITFDISC KIWSSEAAVL STPASVASAD VGRFEDEEPS  240
NPYPNLNLTF NLNEQNGNGS AYPNSSEKKI PRSRKRSRSS GVKIEEKTSH QQPAPAVGVG  300
ASNSSNPTPN LVEETVKSCL LPLFKELLDS SQNGLRGSSR GLMNLDPFGG SMNLPFGDIT  360
DEKWRKQHIL ELEVCSKRLE LVQDQIKSQL EELRSMRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	3e-68	GeBP family protein