PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024991452.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MYB | ||||||||
Protein Properties | Length: 385aa MW: 43954.9 Da PI: 6.9833 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.4 | 7.8e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ + ++G+g +W + +++ g++R++k+c++rw++yl XP_024991452.1 14 RGPWSPEEDAKLKGFIDRYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38 | 3.7e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T +Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ XP_024991452.1 69 GEFTDDEDRIICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence |
MGRAPCCDKE NVKRGPWSPE EDAKLKGFID RYGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLAM 120 LPSFQKKPSF FPSISLQSPP PYRSDQFLTS NFSPFPTYST PPNFMNHNMN SLLTTAAAAT 180 TLVQDHINIT HLSPPPPPPP PPDINSLISL ITNNDNCFYL GFQAEDHQNM YNSPMGYHYL 240 TSDVKESMLM FGSGGGDGHE VSATGSSSEG GSCMSQISYG DYNKDHNIQK QQQHHHQIKQ 300 EDRFALQGFG DQSQSFFINH NYTDQKPKVD YNLKNYEKPL DSNHLEEVKQ LIIGNNRSSY 360 WFNNDDDEYK TTHDDDDHKE IRYHY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-75 | MYB family protein |