PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024991235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23757.3 Da PI: 8.1183 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.3 | 2e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA ELSvLCdaeva++ifs++g+lye+ss XP_024991235.1 9 KRIENATSRQVTFSKRRIGLLKKACELSVLCDAEVALLIFSQKGELYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 67.3 | 5.1e-23 | 81 | 169 | 9 | 97 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 e ++++l+++++ ++k+ie+L+ +qR+l+G++L s+s+ eL +L ++Le+sl+ iR++Kn l+++qie+l+ ke+ l een++L ++ XP_024991235.1 81 EIEPQNQQLKHDATIIQKKIEQLEVSQRKLMGQNLASCSVDELLKLDSKLEHSLTIIRARKNLLFKDQIENLKAKERFLLEENTRLCQQ 169 45667899*****************************************************************************9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence |
MVRGKVEMKR IENATSRQVT FSKRRIGLLK KACELSVLCD AEVALLIFSQ KGELYEFSSS 60 NIKKTIQKYR DNAKANESCN EIEPQNQQLK HDATIIQKKI EQLEVSQRKL MGQNLASCSV 120 DELLKLDSKL EHSLTIIRAR KNLLFKDQIE NLKAKERFLL EENTRLCQQN TSLCEKEIHV 180 TATSRESIQN LEVETELFIG SRLDEE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 7e-70 | MIKC_MADS family protein |