PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024991168.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 300aa    MW: 34529.5 Da    PI: 4.5046
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024991168.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-1876129356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++ +eq++ Le+ Fe ++++  e++ +LAk+l+L+ rqV +WFqNrRa++k
  XP_024991168.1  76 KKRRLMAEQVQFLEKSFEVENKLEPERKIQLAKELNLQPRQVAIWFQNRRARYK 129
                     4557889**********************************************9 PP
2HD-ZIP_I/II127.65.1e-4175166192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl +eqv++LE+sFe e+kLeperK +la+eL+lqprqva+WFqnrRAR+ktkqlEkdy++Lk++yd+l+ e ++L++++e+L++e++
  XP_024991168.1  75 EKKRRLMAEQVQFLEKSFEVENKLEPERKIQLAKELNLQPRQVAIWFQNRRARYKTKQLEKDYDFLKSSYDRLQLEFDSLQQDNEKLKNEVQ 166
                     69**************************************************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MAAMEDEMVF QDSNITALLS SASSSQVLDS LWIPTSSSTS FHGEANTATR VKPDKPLEKG  60
SSHDEDYENC YSQPEKKRRL MAEQVQFLEK SFEVENKLEP ERKIQLAKEL NLQPRQVAIW  120
FQNRRARYKT KQLEKDYDFL KSSYDRLQLE FDSLQQDNEK LKNEVQILNE KLVQREKAKQ  180
DSLACGFPTM ELESHAGKPI PIPIPIPNLT QNGTNVADMV ICKHEDANSV SVSAKSDVIN  240
SPHQDSCNLL ENQSDFSQDE EDNLSRNILR FPKSEYEPYF DLTEGCLEYP LEDQSLWLWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARYKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-44HD-ZIP family protein