PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990999.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 847aa MW: 97657.5 Da PI: 7.493

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.3	1.1e-27	90	193	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 +fY+eYA+++GFs+ +++s++sk+++e+++++f Cs++g+++e++k+ e+++ +r+ ++t+Cka+++vk++ dgkw ++++e XP_024990999.1 90 SFYQEYARSMGFSTAIQNSRRSKTSREFIDAKFACSRYGTKREHDKSfnrprsrqgsnqdPENASGRRSCSKTDCKASMHVKRRPDGKWIIHRFE 184 5*******************************************99999998876666777999*********************** PP FAR1 83 leHnHelap 91 +eHnHel p XP_024990999.1 185 KEHNHELLP 193 ****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence
MDIDLRLPSG ENEKEEKEEA KEMSNMMDGE HKMHSDDVLG RDMVGIRDKL PPDSDGGVNS 60 PSVDMVDFKE DINLEPIAGM EFESHGEAYS FYQEYARSMG FSTAIQNSRR SKTSREFIDA 120 KFACSRYGTK REHDKSFNRP RSRQGSNQDP ENASGRRSCS KTDCKASMHV KRRPDGKWII 180 HRFEKEHNHE LLPAQAVSEQ TRKMYAAMAR QFAEYKNVVG LKNDSNNPFE KGRNMALEAG 240 EANILCKFFM QMQSINSNFF YAIDIGEDQR LKNMLWVDAK TRHDYTNFCD VVSFDTSYVK 300 NKYRIPLALF IGVNQHYQFM LLGCALLSDE TTATYSWVMQ TWLTAMGGRV PKVVITDKDQ 360 YLESVVSQVF PSSKHCFCLW NIMGKISEAL NQVIKQHGNF MAKFEKCIYR SWTDEEFEKR 420 WFKMVNRFGL KDFDWMQSLY ESRKQWVPIY MRDVLLAGMS TLQRSESVNC SFDKYVHRKT 480 SMQEFVRQYE TIIQDRYEEE AKGDSDSWNK PPTLRSPSPF EKHVSSIYTH AVFKKFQSEV 540 LGAVACMPKK EAQEDMIITF RVSDFEKSMD FNVTYNESTT EVSCMCRLFE FKGFLCRHAM 600 IVLQICGLSA IPSQYILKRW TKDVKNRCLI SEGPEQVQYR VQRYNDLCQR AIKLGEEGSL 660 SQESYNMALR ALEDVYANCV CLNNSNKNLI EAGTSTAPGV LRIEEDNQSR NMRTNKKKNP 720 MKKRKVNSEQ DIMTVGAQDS LQQLDKLSSR SVTLDGYFGP QQSMQGMVQL NLMAPSRENY 780 YGNQQAIQGL GQLNSIAPNH ESYYGAQPTL HGLGQMDFFR TPGFTYGIRE EPNVRTTQLH 840 DDGSRHA

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence

MDIDLRLPSG ENEKEEKEEA KEMSNMMDGE HKMHSDDVLG RDMVGIRDKL PPDSDGGVNS  60
PSVDMVDFKE DINLEPIAGM EFESHGEAYS FYQEYARSMG FSTAIQNSRR SKTSREFIDA  120
KFACSRYGTK REHDKSFNRP RSRQGSNQDP ENASGRRSCS KTDCKASMHV KRRPDGKWII  180
HRFEKEHNHE LLPAQAVSEQ TRKMYAAMAR QFAEYKNVVG LKNDSNNPFE KGRNMALEAG  240
EANILCKFFM QMQSINSNFF YAIDIGEDQR LKNMLWVDAK TRHDYTNFCD VVSFDTSYVK  300
NKYRIPLALF IGVNQHYQFM LLGCALLSDE TTATYSWVMQ TWLTAMGGRV PKVVITDKDQ  360
YLESVVSQVF PSSKHCFCLW NIMGKISEAL NQVIKQHGNF MAKFEKCIYR SWTDEEFEKR  420
WFKMVNRFGL KDFDWMQSLY ESRKQWVPIY MRDVLLAGMS TLQRSESVNC SFDKYVHRKT  480
SMQEFVRQYE TIIQDRYEEE AKGDSDSWNK PPTLRSPSPF EKHVSSIYTH AVFKKFQSEV  540
LGAVACMPKK EAQEDMIITF RVSDFEKSMD FNVTYNESTT EVSCMCRLFE FKGFLCRHAM  600
IVLQICGLSA IPSQYILKRW TKDVKNRCLI SEGPEQVQYR VQRYNDLCQR AIKLGEEGSL  660
SQESYNMALR ALEDVYANCV CLNNSNKNLI EAGTSTAPGV LRIEEDNQSR NMRTNKKKNP  720
MKKRKVNSEQ DIMTVGAQDS LQQLDKLSSR SVTLDGYFGP QQSMQGMVQL NLMAPSRENY  780
YGNQQAIQGL GQLNSIAPNH ESYYGAQPTL HGLGQMDFFR TPGFTYGIRE EPNVRTTQLH  840
DDGSRHA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	FAR1 family protein