PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024990910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 26841.6 Da PI: 5.4854 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8.4e-12 | 84 | 128 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rE+ RRdr+N++f eL ++l + +++K +K +iL A++ I +L XP_024990910.1 84 GREKLRRDRMNERFLELGSILEPG---RAPKTDKTAILSDAIRMITQL 128 59*********************9...9******************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MEIDENPNWL FDYGLMEDIS AAHFTVPPPP LPPPIVFDWP SPASLPAVSI EIESSFIDFE 60 SPKEAGPRKR LKSEPNNVFG SKAGREKLRR DRMNERFLEL GSILEPGRAP KTDKTAILSD 120 AIRMITQLRS ESERLNESNV DLQEKIKELK AEKNELRDEK QRLKVEKEKL EQQVKSMNGQ 180 PSYLAHATAM RAAFAAQEQA AGNKLMPFVG YPSVAMWQFM PSSVVDTSQD HVLRPPVA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 73 | PRKRLKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 5e-63 | bHLH family protein |