PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990866.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 278aa MW: 31489.8 Da PI: 9.1931

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990866.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.8e-13	89	136	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h+e+ErrRR+riN ++ Lr+l+P K++Ka+ L +++ ++k+L+ XP_024990866.1 89 RNHSEAERRRRERINGHLSMLRSLIPGT-----NKMDKASLLAEVISHLKQLR 136 58***********************6.....5***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MDFPPNCFKG FTSSEEYALK EMMMMRGGCG RTTSSSSSLV LDSERGEIVR ALVRPGTIHH 60 HLHPHSHQHH HQRHHQKGAK AEKALMALRN HSEAERRRRE RINGHLSMLR SLIPGTNKMD 120 KASLLAEVIS HLKQLRRNAT DTTKGVLIPM DIDEVKVEQQ DDNSLDGSSY SIKASLCCEY 180 KHEVLSDLKE ALDGLHLKTI RAEIATLGSR MMNLFVITGS KDDVNIKDVM SSVRQALKSV 240 LDKFYASQEF SESNTLSNKR RRMSFFTPSN SSSLEDFW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	100	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-35	bHLH family protein