PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024990864.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 293aa    MW: 32643.1 Da    PI: 6.7964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024990864.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-092572354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      +  rE++RRdr+N+ f eL + l ++     +K +Ka+iL  +++ +++L
  XP_024990864.1 25 LQKADREKQRRDRLNEQFTELGKTLDPD----RPKFDKATILGDTIQMLNDL 72
                    56779********************997....79*************99988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MDNLSPPNQF NSESRPGSEP KDRKLQKADR EKQRRDRLNE QFTELGKTLD PDRPKFDKAT  60
ILGDTIQMLN DLTDQVSRLK SEYAMLTEES RELTQEKHDL REEKASLKSD IENLNLQYQQ  120
RLRAIYPWGH MDQSVVMHPP SYPYPVPMPM PPGSIPMHPT IQPYPFFGNQ NPGVVSNPCS  180
TFFQSIQYVS PVAQPSTRSH VSSRQGSRNK SSEQGESGSG KDVDSNDVAT ELELKTPGST  240
GDQEGSLAQS KSKKLHRKEN SVSDESSPSG CSSSRTIQAS SSNSVVGGKN CDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.12e-68bHLH family protein