PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990863.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

CO-like

Protein Properties

Length: 436aa MW: 49280.7 Da PI: 4.8139

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	28.1	4.3e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ +k+++++C ++++lC+ C H+ H++v XP_024990863.1 17 ARACDNCIRKRARWYCAADDVFLCQFCDALVHSAnplargHERV 60 578**************************999657788888876 PP
2	CCT	68	2.5e-23	378	421	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_024990863.1 378 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 421 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MVSSEKKLAN AMGGKTARAC DNCIRKRARW YCAADDVFLC QFCDALVHSA NPLARGHERV 60 RLKLASVKLS SMEILPPTWY QGFTKKSRSP RGKNSNKYGS HRIPNSNETR LSFNSIHLVP 120 EIGSDELINA VNSDDQLPYQ VPVSDPFSDV LCFSGDFNEM LVPIQADTIT PSGTKHDESE 180 VPFDMNSLNG LVLPSDLELA EFAADVESLL GKSLDEESFN IEALEMVDCR LNVDSERVKV 240 EEDQLQWEAA EIEMMKEPFQ LSFDYDSPVT WEEEDDEKVA ENRMGMVVQK EDEKCVVGDD 300 GNVNIVDDTV SKNSRKMLKL DYEGIIAAWD DQRSPWATGD RPELDPNDCW PDCMHSDDCG 360 DIGIMMMMGK LTRLDGGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR 420 ASFAAATASG FPLLST

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MVSSEKKLAN AMGGKTARAC DNCIRKRARW YCAADDVFLC QFCDALVHSA NPLARGHERV  60
RLKLASVKLS SMEILPPTWY QGFTKKSRSP RGKNSNKYGS HRIPNSNETR LSFNSIHLVP  120
EIGSDELINA VNSDDQLPYQ VPVSDPFSDV LCFSGDFNEM LVPIQADTIT PSGTKHDESE  180
VPFDMNSLNG LVLPSDLELA EFAADVESLL GKSLDEESFN IEALEMVDCR LNVDSERVKV  240
EEDQLQWEAA EIEMMKEPFQ LSFDYDSPVT WEEEDDEKVA ENRMGMVVQK EDEKCVVGDD  300
GNVNIVDDTV SKNSRKMLKL DYEGIIAAWD DQRSPWATGD RPELDPNDCW PDCMHSDDCG  360
DIGIMMMMGK LTRLDGGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR  420
ASFAAATASG FPLLST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	389	405	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	4e-92	CO-like family protein