PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024990859.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 162aa MW: 18052.6 Da PI: 8.0539 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128 | 4.3e-40 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+++r+C+++C +apyf a++p+kfa vhk+FGasnv+k+l+++pe +r+da++slv+eAe r++dPvyG++g i +lq ++ ql+++la XP_024990859.1 11 SCAACKFMKRRCTPHCLFAPYFRADEPNKFAKVHKVFGASNVTKILNEVPEPQRQDAVNSLVFEAEERLKDPVYGCIGAIASLQDKMFQLQHDLA 105 6********************************************************************************************** PP DUF260 96 llkee 100 ++k++ XP_024990859.1 106 VAKAR 110 99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MRSQEARSSS SCAACKFMKR RCTPHCLFAP YFRADEPNKF AKVHKVFGAS NVTKILNEVP 60 EPQRQDAVNS LVFEAEERLK DPVYGCIGAI ASLQDKMFQL QHDLAVAKAR LARCSSRASY 120 ASCSTTSPLM MLDGEFGLTS FDDFMVVDQG GLTTDFRQHP FP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 6e-60 | LBD family protein |