PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024990847.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 171aa MW: 19829.5 Da PI: 9.5491 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.3 | 6.6e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf kRrng+lKKA+ELSvLCdaeva+iifs+ gklye++s XP_024990847.1 9 KRIENKINRQVTFGKRRNGLLKKAYELSVLCDAEVALIIFSNGGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 88.7 | 1.1e-29 | 81 | 171 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++++a+s++qe+ kLk++++ q++qRh+lGe+Le+L keL qLe+qL++sl+++Rs+Kn+++l+q+++lq+ke++l e nk+Lr+k+ XP_024990847.1 81 NHQDQDAQSSYQEYLKLKAKVDIQQQSQRHYLGEELERLGSKELDQLERQLDSSLRQVRSTKNQHMLDQLSDLQQKEQSLLEVNKSLRSKV 171 368999**********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MGRGRVELKR IENKINRQVT FGKRRNGLLK KAYELSVLCD AEVALIIFSN GGKLYEFCSG 60 PSMSKTLERY QRCSYGAMEA NHQDQDAQSS YQEYLKLKAK VDIQQQSQRH YLGEELERLG 120 SKELDQLERQ LDSSLRQVRS TKNQHMLDQL SDLQQKEQSL LEVNKSLRSK V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 2e-83 | MIKC_MADS family protein |