PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024990846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28335.2 Da PI: 9.0803 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.7 | 4e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+e+s+ XP_024990846.1 10 RIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSNKGKLFEFST 59 8***********************************************96 PP | |||||||
2 | K-box | 106.7 | 2.7e-35 | 82 | 173 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++a s++ e++kLk++ e Lqr++Rh++Ged+esLslke+q+LeqqL+++lk+iRs+Kn+ll+e+i+elqkk k++qe+n++L+kk++e XP_024990846.1 82 AADAAPRSWTLEYNKLKSRAELLQRNHRHYMGEDIESLSLKEIQNLEQQLDTGLKNIRSRKNQLLHESISELQKKGKAIQEQNTTLTKKIKE 173 46777899*********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence |
MGRGKVQLRR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIVFSN KGKLFEFSTD 60 SCMESILERY ERYSYTERQL VAADAAPRSW TLEYNKLKSR AELLQRNHRH YMGEDIESLS 120 LKEIQNLEQQ LDTGLKNIRS RKNQLLHESI SELQKKGKAI QEQNTTLTKK IKEKEKEKTI 180 TQNVPWEQHN YVDTDATFLM PPPPPALNIG ENYNQGGGGG EAAEGRTNDL DLSLQPIYSC 240 HLRCFPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 5e-97 | MIKC_MADS family protein |