PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024990771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 765aa MW: 86290.1 Da PI: 6.3459 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 88.9 | 4.1e-28 | 511 | 561 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +is+ +l++yF +++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ XP_024990771.1 511 ERNISFPVLQQYFPGSLKDAAKSIGVCPTTLKRICREHGITRWPSRKIKKV 561 789**********************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 765 aa Download sequence |
MPQTTTMFGS MKENALDFSR MDQISYDLSF SNPWDSSSSY LNSSETYLRR LNPNPSHRYF 60 KDEIDRLIQA IEYLKESTRD IDILIQLWLP VPRGGECVLT TXDQPFILNS ESNXLLDYRQ 120 ISRSQHFTTD EDSEAFLGLP SLVFLKKYPM CTPAFQFLGK EEDPXIDIAQ QLXLGGSLHL 180 PVFELGSGTC LGVIEIVTTS QNVSYHDPLN NIXKALEAFD LRSSEFLIHP KLEDCNGSYQ 240 VVLAEIREVL KSVCETHCFP LAQTWSLCTQ QGRGGCQQQS ATCISVISSA SYVYNPHVLG 300 FHEACAERHL LRGEGIAGKA LGTNKPCFAT DIKAFCRTEY PLADHARMFG LGGAVAIRLR 360 STYMGPVDFI LEFFLPHDCR NEEEQKHILS SISSVIQHVS RSLRVINDEE LAGEDSSSVK 420 ETATQDASSW ISHMLDAQQR GESFIVSMGS HKEEPEEFKV INQWDYHEKS IYRRSTLPEC 480 AKQREPNLGP KGRRRSSGTR RSEEKRRVKA ERNISFPVLQ QYFPGSLKDA AKSIGVCPTT 540 LKRICREHGI TRWPSRKIKK VGHSLKKLQL IIDSVQGAEG TIQLESFYTN FPELSSPVSP 600 SPKPTNDCVN LFKSQKTSSC SSSCASHNSG SSPLRTQRDT HVDYHHSNEV LVPLLKRSNP 660 ISRDEGGFRV KAIYGEEKIR LSMSQHWDLG DLQREIMRSF SIDDMDNITL KYLDDDSEWV 720 LLTCDADLEE CMDLNTSSKR CTIKLFLHQS FHPESGSSFT GDGPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76350.1 | 1e-168 | Nin-like family protein |