PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990735.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 418aa MW: 48358.7 Da PI: 6.3767

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990735.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.4	2e-07	99	145	45	90
FAR1 45 kkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + k+++e r+++ +rtgC+ ++k +++k + ++e + +e++HnH l XP_024990735.1 99 HCKHQREVRNSNIKRTGCTTCVKFRLMKgTRTYECYGFEEDHNHLLL 145 455688999*****************99************885 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MEIPNVMKNN GKNPIDSSMP INSNEDTVDV MEVVTWETID QADEGLSISP GGNNWYTPVV 60 EEVEKPIIGS VYPSLDVAES VYQKYAETAG FESFNSMVHC KHQREVRNSN IKRTGCTTCV 120 KFRLMKGTRT YECYGFEEDH NHLLLRHDDI DLTRKGRQMK FSDQHFVHDA GISNMGATRA 180 HKLHTSLRGG YEYGDPTVAD YQNYKRGCDN FVGRGDAKVL VDLMTTKRDA DNNFFFEYNC 240 VGSELHTIFW VDEVARFNYS EFGDVISFDV TFQTNRHFMV FVPFTAVDNH NCNVVVGSAL 300 IGHEHVPNYK WLLQAFQKAH SKPPMMILTD QRPAMKQAIA SVFPDSRHML CIWHIMNKVP 360 NKFSYDLLNN TTFKKQFFKL VWNIHISTDE FESRWMVLME EFSLQDHQWL KDMFALRS

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MEIPNVMKNN GKNPIDSSMP INSNEDTVDV MEVVTWETID QADEGLSISP GGNNWYTPVV  60
EEVEKPIIGS VYPSLDVAES VYQKYAETAG FESFNSMVHC KHQREVRNSN IKRTGCTTCV  120
KFRLMKGTRT YECYGFEEDH NHLLLRHDDI DLTRKGRQMK FSDQHFVHDA GISNMGATRA  180
HKLHTSLRGG YEYGDPTVAD YQNYKRGCDN FVGRGDAKVL VDLMTTKRDA DNNFFFEYNC  240
VGSELHTIFW VDEVARFNYS EFGDVISFDV TFQTNRHFMV FVPFTAVDNH NCNVVVGSAL  300
IGHEHVPNYK WLLQAFQKAH SKPPMMILTD QRPAMKQAIA SVFPDSRHML CIWHIMNKVP  360
NKFSYDLLNN TTFKKQFFKL VWNIHISTDE FESRWMVLME EFSLQDHQWL KDMFALRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-50	FAR1 family protein