PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990723.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 1120aa MW: 127147 Da PI: 8.3053

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990723.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.6	1.8e-17	90	182	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+ +GF+vrks++++ r+g + ++ fvCskeg +++ + + ++k +r+r e r +C a++k++ + + + v+k ++eHnH l+ XP_024990723.1 90 AYKKYSXAAGFDVRKSTQRTD-RKGIVLRKFFVCSKEGMKKRXSYNtlegtSKKDKRRRLEFRSSCPACIKLHVVHGNCYXVYKXVEEHNHCLV 182 5*************98887.7888***********999999999889999999******************************885 PP

Sequence ? help Back to Top
Protein Sequence Length: 1120 aa Download sequence
MSNEDDQQLI SNSVFNNVEG ERMSNEDTHK RISGDVYDGE QYLNDALTEE SDNNDVSSPY 60 QSRTWTPNVG DMFKPIVGTK FGNLKDAFEA YKKYSXAAGF DVRKSTQRTD RKGIVLRKFF 120 VCSKEGMKKR XSYNTLEGTS KKDKRRRLEF RSSCPACIKL HVVHGNCYXV YKXVEEHNHC 180 LVLPEDEHLL RSNRKMSYSQ QYFTMKLSNA NIGPVSSYNL AKEMVGSYDR VGATKTEFKN 240 FSRDVSSFIG NKXAQMIVDK FTLKKDTMPN FSFEYLVGDK GELSGCFWAD ETCKLNYKAF 300 GDVVSFDATF KKNKYNMMKK EPYAWLLNAF LFVHGSEPQM VITDQDLGMK AAIEVIFKSA 360 KHRLCMWQIM NKLPSKEIIA SLWTCSXLSK DIIQDRDKER KGEFKCFIQF NVIRWHHEIK 420 KVPKRYILQR WRKDAVKLPS TKAMLNGTPD TNNALSDIYS SVGRVTSCLG NDIEKLGQFI 480 ECIKLFENEL ESNSISESSR SKKDTIESFT GITQPAEITI KSELPFAFWS LSYMHRLSDM 540 RKHYCVLPTV LIVLSFTINV VSSSSSSTIS RRFRFNVEWK NISRVCNRKA ILTVNGEYPG 600 PTIAVNEGEQ VEIKVTNGVP RNTTIHWHGI KQLRSGWADG PAYVTQCPIK PGGSYTYKFT 660 VTGQRGTLWW HAHIAWQRAT VYGAIVIYPR MPYPFSIPIE AEIPIIFGEW WNLPVEGIED 720 EMYKFGSGPN SSDAYTINGL PGSLYPCSLK DTFIQTVEHG KTYMLRIINA ALNDELFFTI 780 ANHTLTVVEI DASYTKPFDT KAIMITPGQT STVLFTANQY HHDSTGLFVM AARPYLTTVF 840 PFDNSTTIGF LKYKGTMAEN MLLPEPSDLV LPQHLPQMED HAFATTFSRQ LRSLATARYP 900 CNVPKKIDKR VVITISLNLQ DCPANQTCKG LNGKRYAASM NNQSFIRPPT SILEWYYLNS 960 SSTQYSYDFP HKPPHVFDYT GIDPLMHNLN PDFGTKLFAV EYGTRLEIVL QDTGFLNLEN 1020 HPIHIHGHNF FIVGTGYGNY NADKDTVGYN LVDPPERNTV GVPMGGWAAV RINADNPGVW 1080 FMHCHLEEHT SWGLASGFIV KSGSKSSQSL LPPPDDLPAC

Sequence ? help Back to Top

Protein Sequence Length: 1120 aa Download sequence

MSNEDDQQLI SNSVFNNVEG ERMSNEDTHK RISGDVYDGE QYLNDALTEE SDNNDVSSPY  60
QSRTWTPNVG DMFKPIVGTK FGNLKDAFEA YKKYSXAAGF DVRKSTQRTD RKGIVLRKFF  120
VCSKEGMKKR XSYNTLEGTS KKDKRRRLEF RSSCPACIKL HVVHGNCYXV YKXVEEHNHC  180
LVLPEDEHLL RSNRKMSYSQ QYFTMKLSNA NIGPVSSYNL AKEMVGSYDR VGATKTEFKN  240
FSRDVSSFIG NKXAQMIVDK FTLKKDTMPN FSFEYLVGDK GELSGCFWAD ETCKLNYKAF  300
GDVVSFDATF KKNKYNMMKK EPYAWLLNAF LFVHGSEPQM VITDQDLGMK AAIEVIFKSA  360
KHRLCMWQIM NKLPSKEIIA SLWTCSXLSK DIIQDRDKER KGEFKCFIQF NVIRWHHEIK  420
KVPKRYILQR WRKDAVKLPS TKAMLNGTPD TNNALSDIYS SVGRVTSCLG NDIEKLGQFI  480
ECIKLFENEL ESNSISESSR SKKDTIESFT GITQPAEITI KSELPFAFWS LSYMHRLSDM  540
RKHYCVLPTV LIVLSFTINV VSSSSSSTIS RRFRFNVEWK NISRVCNRKA ILTVNGEYPG  600
PTIAVNEGEQ VEIKVTNGVP RNTTIHWHGI KQLRSGWADG PAYVTQCPIK PGGSYTYKFT  660
VTGQRGTLWW HAHIAWQRAT VYGAIVIYPR MPYPFSIPIE AEIPIIFGEW WNLPVEGIED  720
EMYKFGSGPN SSDAYTINGL PGSLYPCSLK DTFIQTVEHG KTYMLRIINA ALNDELFFTI  780
ANHTLTVVEI DASYTKPFDT KAIMITPGQT STVLFTANQY HHDSTGLFVM AARPYLTTVF  840
PFDNSTTIGF LKYKGTMAEN MLLPEPSDLV LPQHLPQMED HAFATTFSRQ LRSLATARYP  900
CNVPKKIDKR VVITISLNLQ DCPANQTCKG LNGKRYAASM NNQSFIRPPT SILEWYYLNS  960
SSTQYSYDFP HKPPHVFDYT GIDPLMHNLN PDFGTKLFAV EYGTRLEIVL QDTGFLNLEN  1020
HPIHIHGHNF FIVGTGYGNY NADKDTVGYN LVDPPERNTV GVPMGGWAAV RINADNPGVW  1080
FMHCHLEEHT SWGLASGFIV KSGSKSSQSL LPPPDDLPAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	147	KKRXSYNTLEGTSKKDKRRR
2	144	148	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-31	FAR1 family protein