PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990644.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 691aa MW: 79903.5 Da PI: 8.8157

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990644.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.3	1.6e-10	94	144	47	90
FAR1 47 k......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + e++rr+++ +rtgCka+lkv+ k +g++ev+++ + HnH l+ XP_024990644.1 94 DslevssGERKRRNTNFKRTGCKACLKVHYVKeSGRYEVYHFIEGHNHMLC 144 3444444788999***************999**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 691 aa Download sequence
MSDQREGISS NEIHDRYSDA VANEDGCYDA LSQEMGESPG GTKIWVPKVD NNICSKVGDF 60 FSSVESVENM YRKYDDVAGF DIRKEGNPPK KEFDSLEVSS GERKRRNTNF KRTGCKACLK 120 VHYVKESGRY EVYHFIEGHN HMLCCSDEKM FTRSRRQLDY KDRRNVYHAP STKVGITRSR 180 RMQLAMNGGL VASGGTARDH MNFRRDIMLF AGNKDAQMLI NKMSKRREHC PEYFFEYKCD 240 EKELIAIFWA DKTARMNYKH FGDTISFDAT FRTNKHAMIF VPFVAIDNHK KSVVVGASLI 300 RNESVVNFTW VFNAFMKAHG SQPQFVITDQ CAAMKQAIPI VFSKSTHRLC MWHITKKVKE 360 KIRDHLAHGT PFKSKFNKLV WNVHISHESF EDKWNALMDE YGLRGHSWFE EMYAIRESWI 420 PAYFKEYPMS GLMRTTSRSE TKVYTKTIFF DVQKEMNKAV WFCGVVEVVE VSDKMIYIIT 480 HKNKNSEVKA TYKVVHDVRD ESFDCSCNHF VRNGILCRHA FKVMLNSEVQ SIPEKYILPH 540 WRRELVPIEL MPARVRYGEM DVEKQALIYQ AISMFDLIIG RVRNDKGALT EFVEQLERLG 600 DEISVDVPIL TGTEQKRNDI QELLCVTEPE SVDVLPPTGV RNKGCGTGKR LVGMSERVSM 660 NAKKPKRLCR TCDKMGWHDS RSCPMKGDST N

Sequence ? help Back to Top

Protein Sequence Length: 691 aa Download sequence

MSDQREGISS NEIHDRYSDA VANEDGCYDA LSQEMGESPG GTKIWVPKVD NNICSKVGDF  60
FSSVESVENM YRKYDDVAGF DIRKEGNPPK KEFDSLEVSS GERKRRNTNF KRTGCKACLK  120
VHYVKESGRY EVYHFIEGHN HMLCCSDEKM FTRSRRQLDY KDRRNVYHAP STKVGITRSR  180
RMQLAMNGGL VASGGTARDH MNFRRDIMLF AGNKDAQMLI NKMSKRREHC PEYFFEYKCD  240
EKELIAIFWA DKTARMNYKH FGDTISFDAT FRTNKHAMIF VPFVAIDNHK KSVVVGASLI  300
RNESVVNFTW VFNAFMKAHG SQPQFVITDQ CAAMKQAIPI VFSKSTHRLC MWHITKKVKE  360
KIRDHLAHGT PFKSKFNKLV WNVHISHESF EDKWNALMDE YGLRGHSWFE EMYAIRESWI  420
PAYFKEYPMS GLMRTTSRSE TKVYTKTIFF DVQKEMNKAV WFCGVVEVVE VSDKMIYIIT  480
HKNKNSEVKA TYKVVHDVRD ESFDCSCNHF VRNGILCRHA FKVMLNSEVQ SIPEKYILPH  540
WRRELVPIEL MPARVRYGEM DVEKQALIYQ AISMFDLIIG RVRNDKGALT EFVEQLERLG  600
DEISVDVPIL TGTEQKRNDI QELLCVTEPE SVDVLPPTGV RNKGCGTGKR LVGMSERVSM  660
NAKKPKRLCR TCDKMGWHDS RSCPMKGDST N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-61	FAR1 family protein