PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990582.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 343aa MW: 39837.7 Da PI: 6.1343

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176	1.1e-54	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv++yL+kk++++ +el +vi++vd+yk+ePwdL++ ++ + e+++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ XP_024990582.1 7 VPPGFRFHPTDEELVDYYLRKKINSRAIEL-DVIRDVDLYKIEPWDLQElcRLGTeEQNDWYFFSHKDKKYPTGSRTNRATAAGFWKATGRDKAI 100 69**************************.9***********954544442566******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +s k+ lvg++ktLvfykgrap+g k+dW+mheyrle XP_024990582.1 101 YS-KQDLVGMRKTLVFYKGRAPNGLKSDWIMHEYRLE 136 .899*****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MNTFSHVPPG FRFHPTDEEL VDYYLRKKIN SRAIELDVIR DVDLYKIEPW DLQELCRLGT 60 EEQNDWYFFS HKDKKYPTGS RTNRATAAGF WKATGRDKAI YSKQDLVGMR KTLVFYKGRA 120 PNGLKSDWIM HEYRLETDEN ATTTQEEGWV VCRVFKKRLP TLMRRSASEH EPMWYDDHRV 180 SFMPEIDSPT QNNIRPNLDN SINYQYPYGS CKKELDQMQN YQVTPGHCIQ LPLLEGPKLL 240 PSCNSSMPIY GIDINQGIIN LQPSLLTQDH NNNIQQHQGQ NFNDQMTDWR VLDKFVASQL 300 LNQHGDVSIK GNHEESYPNA EEQIAVPEGA SNSISSCQID LWK

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MNTFSHVPPG FRFHPTDEEL VDYYLRKKIN SRAIELDVIR DVDLYKIEPW DLQELCRLGT  60
EEQNDWYFFS HKDKKYPTGS RTNRATAAGF WKATGRDKAI YSKQDLVGMR KTLVFYKGRA  120
PNGLKSDWIM HEYRLETDEN ATTTQEEGWV VCRVFKKRLP TLMRRSASEH EPMWYDDHRV  180
SFMPEIDSPT QNNIRPNLDN SINYQYPYGS CKKELDQMQN YQVTPGHCIQ LPLLEGPKLL  240
PSCNSSMPIY GIDINQGIIN LQPSLLTQDH NNNIQQHQGQ NFNDQMTDWR VLDKFVASQL  300
LNQHGDVSIK GNHEESYPNA EEQIAVPEGA SNSISSCQID LWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-126	NAC family protein