PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990560.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 349aa MW: 38103.1 Da PI: 5.4238

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990560.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.7e-12	119	169	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h +Er+RR+++N+ + Lr+l+P + k+ + a+i +v+YI +Lq XP_024990560.1 119 KMSHVTVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVDYITELQ 169 689***********************9...9*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MVGDQSTSLP EFFDSATSAE QFGETKFLSA GVASPDDIFS ILEALEGVSD EFTALTPLDD 60 HGVEEGAVHN HLLSQKSTSL SAVEELVEAE LEAFSPKNKR HKVSSSVEEG CENSDGQLKM 120 SHVTVERNRR KQMNEHLTVL RSLMPCFYVK RGDQASIIGG VVDYITELQQ VLQSLEAKKQ 180 RKVYSDVLSP RLISSPRTLP LSPRKPPLSP RPSLPISPRT PQSASPYRHR LPSYLLSPSS 240 MANTTPASPC NSSSNSDTIN ELVANSKSCI ADVEVKFSGS NLLLKTLSPR LPGQATKIIS 300 VLEDLSLEIL QATINTIDET LVNSFTIKIG IECKLSAEDL AQHIQHTFC

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MVGDQSTSLP EFFDSATSAE QFGETKFLSA GVASPDDIFS ILEALEGVSD EFTALTPLDD  60
HGVEEGAVHN HLLSQKSTSL SAVEELVEAE LEAFSPKNKR HKVSSSVEEG CENSDGQLKM  120
SHVTVERNRR KQMNEHLTVL RSLMPCFYVK RGDQASIIGG VVDYITELQQ VLQSLEAKKQ  180
RKVYSDVLSP RLISSPRTLP LSPRKPPLSP RPSLPISPRT PQSASPYRHR LPSYLLSPSS  240
MANTTPASPC NSSSNSDTIN ELVANSKSCI ADVEVKFSGS NLLLKTLSPR LPGQATKIIS  300
VLEDLSLEIL QATINTIDET LVNSFTIKIG IECKLSAEDL AQHIQHTFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06120.1	2e-55	bHLH family protein