PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990545.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 698aa MW: 80763.2 Da PI: 8.9298

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990545.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.8	3.1e-07	7	49	49	90
FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 e + r+++ +r+ C+ ++k++++k ++ +e++++++ HnH+l+ XP_024990545.1 7 EMRYRNTNFKRCRCNTCVKLHLTKdRSCYEIYEFVEAHNHALF 49 456688999***********99899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MAIQSSEMRY RNTNFKRCRC NTCVKLHLTK DRSCYEIYEF VEAHNHALFN TNDRRFSRKN 60 RQMKSMNFKN VLNSSSYKVS AIRARCIQTT LNGGFEHNRC SEIDFKNFKR DEVACVGKKD 120 AKMLINKLSN RRDIVYGYFF EYKCNDQKLS AIFWADEVAR INNKEFGDVI SFDGTFRTNN 180 HVMIFVPFLV VDNHKASVVV GSALISGETI ENFTWVLRAF LKCHEKQPVS VITDQCSAMK 240 QAIPLVFTEA KHRLCMWHIM KKVPSKVSVA LNQDPVFNKV INKLVWNIHV GPSEFETKWQ 300 EMIEQYNLGG DPWFVEMYDI GASWIPTFYK DTPMSGLMKT TSRSESSNSY INIYKSYWFD 360 LVQFLNNYDI AIEKQRYKQA VHETITRTIY PKLFTPLRLE SHASGIYSRN VFFDIQKEIK 420 KAVWCCGIGT VECQGDFKTF IITHKNKKSS GNTTYLVSRN YPGNTVECEC NLFTRNGYLC 480 HHAFKVLIND EVDSIPNQYV LRRWKQKLVP VQIQSARVQY SEVDTEKDKC IIDVYSKVDD 540 IISIARNDKS ILCRLEQTLN KFMVDIKEEV PYEDPSKQKL DAIRDHLGVS IQGDVDILPP 600 SRIRNKGCGT GKRLVLGLLS MIWKFKILFL EDLENKTVVF VFQVFDLFEK LLQKLIVADS 660 NLIAISVDGN KVLGFVCCSS TWDILQGSVL KLLPDMSK

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MAIQSSEMRY RNTNFKRCRC NTCVKLHLTK DRSCYEIYEF VEAHNHALFN TNDRRFSRKN  60
RQMKSMNFKN VLNSSSYKVS AIRARCIQTT LNGGFEHNRC SEIDFKNFKR DEVACVGKKD  120
AKMLINKLSN RRDIVYGYFF EYKCNDQKLS AIFWADEVAR INNKEFGDVI SFDGTFRTNN  180
HVMIFVPFLV VDNHKASVVV GSALISGETI ENFTWVLRAF LKCHEKQPVS VITDQCSAMK  240
QAIPLVFTEA KHRLCMWHIM KKVPSKVSVA LNQDPVFNKV INKLVWNIHV GPSEFETKWQ  300
EMIEQYNLGG DPWFVEMYDI GASWIPTFYK DTPMSGLMKT TSRSESSNSY INIYKSYWFD  360
LVQFLNNYDI AIEKQRYKQA VHETITRTIY PKLFTPLRLE SHASGIYSRN VFFDIQKEIK  420
KAVWCCGIGT VECQGDFKTF IITHKNKKSS GNTTYLVSRN YPGNTVECEC NLFTRNGYLC  480
HHAFKVLIND EVDSIPNQYV LRRWKQKLVP VQIQSARVQY SEVDTEKDKC IIDVYSKVDD  540
IISIARNDKS ILCRLEQTLN KFMVDIKEEV PYEDPSKQKL DAIRDHLGVS IQGDVDILPP  600
SRIRNKGCGT GKRLVLGLLS MIWKFKILFL EDLENKTVVF VFQVFDLFEK LLQKLIVADS  660
NLIAISVDGN KVLGFVCCSS TWDILQGSVL KLLPDMSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-52	FAR1 family protein