PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990513.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 287aa MW: 32192.4 Da PI: 7.5737

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990513.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.7	2.1e-43	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++Cv+apyfp +qp+kfanvhk+FGasnv k+l++l++++reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+q++ +l+ XP_024990513.1 16 PCAACKFLRRRCIQECVFAPYFPPDQPQKFANVHKVFGASNVAKILNELNPTQREDAVNSLAYEADARLRDPVYGCVGLISILQHRLKQVQIDLD 110 7*********************************************************************************************9 PP DUF260 96 llkee 100 +k+e XP_024990513.1 111 NAKRE 115 98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MYAVVKVKEK MSSNSPCAAC KFLRRRCIQE CVFAPYFPPD QPQKFANVHK VFGASNVAKI 60 LNELNPTQRE DAVNSLAYEA DARLRDPVYG CVGLISILQH RLKQVQIDLD NAKRELSNYI 120 GPSAMLPILN HGFIQHSVVP YNMQPEPVLG LTGPRSSCFR EVQHHQQILQ DQQQQQQQLL 180 AATGDREQPE VLRNYDDQQQ RSADVLGYNS GFDVVSAQVT GSEFSHMTTT AAAMSPSLSL 240 GGSYDNNIYQ IQHQPQQVPH HLQPHQLLLQ QQPQRAGSPE GRIVRPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-75	LBD family protein