PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024990504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 24511.8 Da PI: 6.493 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.4 | 2.1e-42 | 67 | 166 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+aela XP_024990504.1 67 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPESQRVDAVSSMVYEANARLRDPVYGCAGAICQLQKQVSELQAELA 161 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_024990504.1 162 KAQAE 166 *9976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence |
MEYSGDRSSG ATSPMAISTA VPSSFSHSHS PKTSNNSSSS QLSPTSVLTH PPPSTPSSPP 60 HPVVLSPCAA CKILRRRCVE KCVLAPYFPP TEPLKFTIAH RVFGASNIIK LLQELPESQR 120 VDAVSSMVYE ANARLRDPVY GCAGAICQLQ KQVSELQAEL AKAQAEVLNM QCQQSNLLSL 180 ICMEMDQQHV SPSPPQPPQQ QQPLYDNLNF YSDDANLGSV FELWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-61 | LBD family protein |