PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990472.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARF

Protein Properties

Length: 627aa MW: 70235.4 Da PI: 7.498

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.5	6e-24	130	231	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ ++d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF + + XP_024990472.1 130 FAKTLTQSDANNGGGFSVPRYCAETIfprldyaAEPPVQ--TILVKDVHGQIWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLR--AD 220 89**************************996555555..8********************************************3..47 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_024990472.1 221 NGDLCVGIRRA 231 8888**996 PP
2	Auxin_resp	109.8	2.7e-36	277	360	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++ +FevvY+Prast+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gt++ + d+++WpnS+Wr+L+ XP_024990472.1 277 AANLAANGHPFEVVYYPRASTPEFCVKASTVKAAMRIQWCPGMRFKMAFETEDSSRISWfMGTISLAQVEDQISWPNSPWRLLQ 360 7899******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
MINVMNYVKK PMNDVEKGLD SQLWHACAGG MVQMPPVNSK VLYFPQGHAE HSGVRNVDFG 60 DFRRIPPYIL CQVSVVKFMA DSDTDEVYAK IGLQPLSNQS DCDFDDGDND EGFLGFDHKR 120 NENKEKPSSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAAEPPVQTI LVKDVHGQIW 180 KFRHIYRGTP RRHLLTTGWS NFVNHKKLVA GDSIVFLRAD NGDLCVGIRR AKRGLGGGFL 240 ENSTASSLYG GGFARYRPEK ENVNGERNPS AESAIKAANL AANGHPFEVV YYPRASTPEF 300 CVKASTVKAA MRIQWCPGMR FKMAFETEDS SRISWFMGTI SLAQVEDQIS WPNSPWRLLQ 360 VAWDEPELLQ NVKRVNPWSV ELVSSMPAMH LSPFSPPRKK LRIPQPPDFP LLMMSPSIQG 420 ARHSSHFGLD HNHHLRFNQI HPPFLSRFPN HDSPSRFPLQ EHDENVSCLL TMGNQSPKTS 480 LKKKDVEKDK KKPLFMLFGQ PILTEEQLSE SFSGDTTANV SDGSVVLQNG SVRSSSDDDG 540 TWVETGHCKV FMESEDVGRS LDLTALRSYE ELYRELGGMF GVEKSDHLIY RNAEGVIKHM 600 GDEAFSEFSK AARRLTIVRG GVKGGSR

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

MINVMNYVKK PMNDVEKGLD SQLWHACAGG MVQMPPVNSK VLYFPQGHAE HSGVRNVDFG  60
DFRRIPPYIL CQVSVVKFMA DSDTDEVYAK IGLQPLSNQS DCDFDDGDND EGFLGFDHKR  120
NENKEKPSSF AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YAAEPPVQTI LVKDVHGQIW  180
KFRHIYRGTP RRHLLTTGWS NFVNHKKLVA GDSIVFLRAD NGDLCVGIRR AKRGLGGGFL  240
ENSTASSLYG GGFARYRPEK ENVNGERNPS AESAIKAANL AANGHPFEVV YYPRASTPEF  300
CVKASTVKAA MRIQWCPGMR FKMAFETEDS SRISWFMGTI SLAQVEDQIS WPNSPWRLLQ  360
VAWDEPELLQ NVKRVNPWSV ELVSSMPAMH LSPFSPPRKK LRIPQPPDFP LLMMSPSIQG  420
ARHSSHFGLD HNHHLRFNQI HPPFLSRFPN HDSPSRFPLQ EHDENVSCLL TMGNQSPKTS  480
LKKKDVEKDK KKPLFMLFGQ PILTEEQLSE SFSGDTTANV SDGSVVLQNG SVRSSSDDDG  540
TWVETGHCKV FMESEDVGRS LDLTALRSYE ELYRELGGMF GVEKSDHLIY RNAEGVIKHM  600
GDEAFSEFSK AARRLTIVRG GVKGGSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein