PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024990410.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

HB-other

Protein Properties

Length: 1717aa MW: 191098 Da PI: 5.1166

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024990410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.9	3.1e-17	28	82	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t+ qle+Le+ ++ + yps+ r++L+ +lgLt+rq ++WF+ rR k++k XP_024990410.1 28 KRKMKTAFQLEVLEKTYAVETYPSEPLRAQLSVQLGLTDRQLQMWFCHRRLKDRK 82 89999************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1717 aa Download sequence
MDGASAHGGG VSEGDNKNSG EGGEPKVKRK MKTAFQLEVL EKTYAVETYP SEPLRAQLSV 60 QLGLTDRQLQ MWFCHRRLKD RKTPPVKRPK KEMSGGVGDD MVASGERLGG NEPGGSGGSG 120 SGSSPFGHTD RVVARAGPAV SGSGRVAVTA PAAVATTTEM PSMKRYYEPP HAVSEVRAIA 180 FVEAQLGERL REDGPILGME FDPLPPGAFG APIVQQKSAV RPYEGKPYER PDAKPVKGAV 240 KALHEYQFLP EQPSVRSDSY DRATPARYYG SPSDVATSRT PVTTGRSFSH GNDPIASGYG 300 FQGPIAGVSL VPQQGRQAPL LLPPPAGEFD NAVHKSSTIS PGMETHLGAH PITGIENPFA 360 TPSEKRTTHE EDIARIERKR KSEEARIAKE VEAHEKRIRK ELEKQDMLRR KREEQMRKEM 420 ERQDRERRKE EERLLREKQR EEERYQREQR REMERRVKFL QKESMRAEKL RLKEDMRKEK 480 EAARLKAAND RAAARRIAKE SMELIDDERL ELMEIAVSSK GLPSMLSLDS ETLESLESLR 540 DMLPEFPPKS VHMKKPFKIQ PWTDSENIGN LLMVWKFLIT FADVLGLWPF TLDEFVQAFH 600 DHDPRLLGEI HVALLRSIVK DIEDVARAPS SCLGANQTSA PNPGGGHPHI VEGAFAWGFD 660 ICSWQHHLNP LTWPEILRQF ALAAGFGPKL KKRNADRAHP REENEGVDGG DIISNLRSGV 720 AAENALAIMQ ERGFSNRRSR HRLTPGTVKY AAFHVLSLEG SRGLSILDVA DKIQKSGLRD 780 LTTSKTPEAS IAAALSRDTK LFERTAPSTY CLRSPYRKDP ADGDAIINAA REKIHIFKNG 840 YFDGEEAFDA ERDDAEKDDD SESDVPEDPE VDDIAVDSKM NEISPLSSHD QLFRETSFGG 900 IGNSAAIKSE TLEDMRVDSS IDQSNIIGGT HKGATDLAED TVVDESISGE PWVQGLMEGE 960 YSDLTVEERL NALVALIAVA NEGNSIRVVL EERLEAAMSL KKQMWAEAQI DKRRMKEDFM 1020 MKIQYPSVDD RSDIASNNHQ EILGDPQNDL SNPNELLTTP DGFPLQQPAY AAEKSRSQLK 1080 AFIGHKAEEM YVYRSLPLGH DRRRNRYWQF ITSASRNDPG SGRIFVELRD GCWRLIDSEE 1140 GFNSLLASLD VRGNREAQLY SMLQRIEARF KESAIKMQVD VPGAGYATAC GSNSPSSTVS 1200 IPNTNILEFS SSFAIELGQS GKEMTNALKR YEDFEKWMWG ECFALRAMKF GNARCEHLLR 1260 ICDNCRDLSF FEDNQCFSCH KQCETFLGSN LAFSKHISQF IKKLRLESAS YFHNREFCSP 1320 VRFRLIKAQL ALIEASIPLE ALQPSWSGEC RKSWSVKLVN AGTAKALLEV LTLLESAIRR 1380 DFLSLDFETT DELLGSNNSV TLRATGVCST VSMLPWLPET TACVALRLME LDTSIHYLLS 1440 QKEDAEKDKG PTNFLTLAPR YAMMRNGEEG DHGESLFGSG YFQDPWADPG TSGRGRGRGR 1500 GRGRTRGGRS QKNAGAVGSR SRAKTADMGR SGGQLVGWKG RTRGGGRGGR KRGRRGVRTK 1560 PQKMAKIAND DERDMDQDFL YEESPVVGFQ EWNAEETADL RVAENASSSE YEIENDNNGQ 1620 ALVDEYDDDI MVDSGYRNVY DDVASRGYIG EFGLEGEEEY VGEEDDDVEE EDEEEDEQGG 1680 VDVDGFFNDD SDGNRDVGGG NNNPDDETES SSSGYSD

Sequence ? help Back to Top

Protein Sequence Length: 1717 aa Download sequence

MDGASAHGGG VSEGDNKNSG EGGEPKVKRK MKTAFQLEVL EKTYAVETYP SEPLRAQLSV  60
QLGLTDRQLQ MWFCHRRLKD RKTPPVKRPK KEMSGGVGDD MVASGERLGG NEPGGSGGSG  120
SGSSPFGHTD RVVARAGPAV SGSGRVAVTA PAAVATTTEM PSMKRYYEPP HAVSEVRAIA  180
FVEAQLGERL REDGPILGME FDPLPPGAFG APIVQQKSAV RPYEGKPYER PDAKPVKGAV  240
KALHEYQFLP EQPSVRSDSY DRATPARYYG SPSDVATSRT PVTTGRSFSH GNDPIASGYG  300
FQGPIAGVSL VPQQGRQAPL LLPPPAGEFD NAVHKSSTIS PGMETHLGAH PITGIENPFA  360
TPSEKRTTHE EDIARIERKR KSEEARIAKE VEAHEKRIRK ELEKQDMLRR KREEQMRKEM  420
ERQDRERRKE EERLLREKQR EEERYQREQR REMERRVKFL QKESMRAEKL RLKEDMRKEK  480
EAARLKAAND RAAARRIAKE SMELIDDERL ELMEIAVSSK GLPSMLSLDS ETLESLESLR  540
DMLPEFPPKS VHMKKPFKIQ PWTDSENIGN LLMVWKFLIT FADVLGLWPF TLDEFVQAFH  600
DHDPRLLGEI HVALLRSIVK DIEDVARAPS SCLGANQTSA PNPGGGHPHI VEGAFAWGFD  660
ICSWQHHLNP LTWPEILRQF ALAAGFGPKL KKRNADRAHP REENEGVDGG DIISNLRSGV  720
AAENALAIMQ ERGFSNRRSR HRLTPGTVKY AAFHVLSLEG SRGLSILDVA DKIQKSGLRD  780
LTTSKTPEAS IAAALSRDTK LFERTAPSTY CLRSPYRKDP ADGDAIINAA REKIHIFKNG  840
YFDGEEAFDA ERDDAEKDDD SESDVPEDPE VDDIAVDSKM NEISPLSSHD QLFRETSFGG  900
IGNSAAIKSE TLEDMRVDSS IDQSNIIGGT HKGATDLAED TVVDESISGE PWVQGLMEGE  960
YSDLTVEERL NALVALIAVA NEGNSIRVVL EERLEAAMSL KKQMWAEAQI DKRRMKEDFM  1020
MKIQYPSVDD RSDIASNNHQ EILGDPQNDL SNPNELLTTP DGFPLQQPAY AAEKSRSQLK  1080
AFIGHKAEEM YVYRSLPLGH DRRRNRYWQF ITSASRNDPG SGRIFVELRD GCWRLIDSEE  1140
GFNSLLASLD VRGNREAQLY SMLQRIEARF KESAIKMQVD VPGAGYATAC GSNSPSSTVS  1200
IPNTNILEFS SSFAIELGQS GKEMTNALKR YEDFEKWMWG ECFALRAMKF GNARCEHLLR  1260
ICDNCRDLSF FEDNQCFSCH KQCETFLGSN LAFSKHISQF IKKLRLESAS YFHNREFCSP  1320
VRFRLIKAQL ALIEASIPLE ALQPSWSGEC RKSWSVKLVN AGTAKALLEV LTLLESAIRR  1380
DFLSLDFETT DELLGSNNSV TLRATGVCST VSMLPWLPET TACVALRLME LDTSIHYLLS  1440
QKEDAEKDKG PTNFLTLAPR YAMMRNGEEG DHGESLFGSG YFQDPWADPG TSGRGRGRGR  1500
GRGRTRGGRS QKNAGAVGSR SRAKTADMGR SGGQLVGWKG RTRGGGRGGR KRGRRGVRTK  1560
PQKMAKIAND DERDMDQDFL YEESPVVGFQ EWNAEETADL RVAENASSSE YEIENDNNGQ  1620
ALVDEYDDDI MVDSGYRNVY DDVASRGYIG EFGLEGEEEY VGEEDDDVEE EDEEEDEQGG  1680
VDVDGFFNDD SDGNRDVGGG NNNPDDETES SSSGYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1494	1503	RGRGRGRGRG
2	1494	1504	RGRGRGRGRGR
3	1496	1506	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein