PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024989965.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25119.1 Da PI: 10.5798 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.5 | 2.4e-20 | 30 | 72 | 7 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 sn vtfskRr g++KKA+EL++LC++e+av++fs+ k++ + XP_024989965.1 30 SNLLVTFSKRRSGLFKKASELCILCGVEIAVVVFSPGKKVFSF 72 6778********************************9999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MKNSSQPPMI TARKSKGRQK IQMKRMVKVS NLLVTFSKRR SGLFKKASEL CILCGVEIAV 60 VVFSPGKKVF SFGHPSVETI VDRFLTQNPP PNSSTSQLVE AHRNANIHQL NRQLTCVNGQ 120 LEIEKNRSEE LSKIRKVGQD NHWWEAPIEN LGLQELEQLK VAMEVLKKNI GEQAKRHLAE 180 VANPMPIVPI SSSMGGSGDS SEVMKGSGLG LSMTPNGFVL GYAHFSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-58 | M-type_MADS family protein |