PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989902.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 369aa MW: 41066.4 Da PI: 6.6128

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989902.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.8	9.2e-14	192	238	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ + +Lr+llP+ +K +Ka+ L ++++++k+L XP_024989902.1 192 KSHSEAERRRRERINNHLTKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 238 79***********************9.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
METVEIVKAT LEDSSDCESD AGRDGRIVML EERSGKDLFV NTCKPFVKPW DCSTNNTTFI 60 FPPPSQSISL IMHHHRPSSW TTLSPPLHFN HLLPCPTGDH PFLLPPPPSS NSPPSSLSSH 120 GGFFKRVVDG LQFAYEGSTS TSTSTTPPST HHHLGFQVVQ HGSDPFGIQP ETGNKIMTAQ 180 EMVDAKAVAA SKSHSEAERR RRERINNHLT KLRSLLPNTT KTDKASLLAE VIQHVKELKH 240 QTSIIAEQVP VPTEINELTI DNTSDEEGRF VIRASLCCED RSDLLPDLIK TLKMLRLRTL 300 KAEITTLGRR VKNVLFVTGE EDHYISNGDT QMVNQWISVI EEALKAVVEK TDDGDDSSFG 360 SVKRQRMNK

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

METVEIVKAT LEDSSDCESD AGRDGRIVML EERSGKDLFV NTCKPFVKPW DCSTNNTTFI  60
FPPPSQSISL IMHHHRPSSW TTLSPPLHFN HLLPCPTGDH PFLLPPPPSS NSPPSSLSSH  120
GGFFKRVVDG LQFAYEGSTS TSTSTTPPST HHHLGFQVVQ HGSDPFGIQP ETGNKIMTAQ  180
EMVDAKAVAA SKSHSEAERR RRERINNHLT KLRSLLPNTT KTDKASLLAE VIQHVKELKH  240
QTSIIAEQVP VPTEINELTI DNTSDEEGRF VIRASLCCED RSDLLPDLIK TLKMLRLRTL  300
KAEITTLGRR VKNVLFVTGE EDHYISNGDT QMVNQWISVI EEALKAVVEK TDDGDDSSFG  360
SVKRQRMNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	203	ERRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-70	bHLH family protein