PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024989832.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 328aa MW: 37461.8 Da PI: 9.6564

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024989832.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.5	3.1e-18	20	67	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G +W++ +++ g++R++k+c++rw++yl XP_024989832.1 20 KGPWTPEEDQKLLSYIQQFGQCSWRSLSAKAGLRRCGKSCRLRWNNYL 67 79*********************************************7 PP
2	Myb_DNA-binding	48.1	2.6e-15	73	117	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+++ eE+ +++++++lG++ W++Ia +++ +Rt+ +k++w+++ XP_024989832.1 73 KGNFSLEEERTIIQLHALLGNR-WSAIATHLP-KRTDSKIKNHWNSH 117 799*****************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MRRSSSSVKK SGNDNDGLKK GPWTPEEDQK LLSYIQQFGQ CSWRSLSAKA GLRRCGKSCR 60 LRWNNYLRPD IKKGNFSLEE ERTIIQLHAL LGNRWSAIAT HLPKRTDSKI KNHWNSHIKK 120 RLAKMGIDPV THKPKVDTPL HGSNLNHMTQ WEAARLEAEA RLVQQPNKHH PYQQPYLVSP 180 PSTHELHKRP TTTLPYLECL DVLKVWQGIL KSKYLIHGGL QTLDSTWSVL KDVPLIRPTT 240 PMINNVESKG SLNEGATTKW YDKTETLMEP FEEYFMCPYD ANITTEDYPQ VKPQGFLEGC 300 LDLPINGGWS SVTNNLVMNA WPPASPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	9e-73	MYB family protein